LabKey Server can use data from the Gene Ontology Database to provide information about the proteins found in MS2 runs. Before you can use it, you must load the Gene Ontology data.

After loading the Gene Ontology data, the data is accessible when viewing an MS2 run. Click Gene Ontology Charts and select the type of information you would like to chart:

  • Cellular Location
  • Molecular Function
  • Metabolic Process
The server will create a pie chart showing gene identification. Hovering over one of the pie slices will show additional information, and clicking will open a page of details for the proteins and gene in that slice.

For example, this GO Cellular Location Chart is available in the the Proteomics Demo. Clicking a wedge will present details about that pieslice.

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