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SimpleSpecimenRepository.xls

SimpleSpecimens specimen_number Vial Id ptid Date Volume Units Specimen Type additive derivative_type Sub Additive Derivative visit_value 526515315.6 526515315.6304.370 249318596 5/17/08 1.0 ML Blood (Whole) Serum Separator Serum N/A 2404 526515315.6 526515315.6304.371 249318596 5/17/08 1.0 ML Blood (Whole) Serum Separator Serum N/A 2404 526515315.6 526515315.6304.372 249318596 5/17/08 1.0 ML...

Step 3: Search the Repository

Files in the repository, both structured and unstructured, are indexed using the full-text search scanner. This is different from, and complimentary to, the search functionality provided by SQL queries, covered in this topic: luceneSearch In this tutorial step you will search your files using full-text search and you will add tags to files to support more advanced search options. Add Search User Interface...

additives.tsv

# additives additive_id ldms_additive_code labware_additive_code additive 8 REDTOP 9 PLAINRED 12 LST_HEP 13 LST_CIT 1 ACD ACD Acid Citrate Dextrose 14 ORA Orasure Collection Container 15 AHP Ammonium Heparin 16 PAC Port-a-cul Transport Tube 17 CPD Citrate Phosphate Dextrose 18 PAX PAXgene Blood RNA tube 19 CPH Cell Preparation Tube Heparin 20 PBS Phosphate Buffered Saline 21 CPS Cell...

Luminex

Premium Feature — Available upon request with all Premium Editions of LabKey Server. Learn more or contact LabKey. LabKey Server's tool for Luminex® assays help you to manage, quality control, analyze, share, integrate and export results from BioPlex instruments. Luminex immunoassays are plate-based assays that can measure multiple analytes independently in each well. Additional information can...

"survey-math.json" attached to page "Survey Designer: Examples"

{ "survey":{ "start":{ "useDefaultLabel":true }, "layout":"auto", "showCounts":false, "sections":[ { "questions":[ { "name":"ParticipantId", "caption":"Participant ID", "shortCaption":"Participant ID", "hidden":false, ...

derivatives.tsv

# derivatives derivative_id ldms_derivative_code labware_derivative_code derivative 1 CEL 2 ADL Adipose Tissue Layer 3 NXD Non-extracted DNA 4 AMN Amniotic Fluid 5 NON None 6 BAL Bronchoalveolar Lavage 7 NPE Neutrophil (PMN) Dried Cell Pellet, Non Viable 8 BLD Blood (Whole) 9 OPC Ova & Parasite Concentrate 10 BLK Tissue Block 11 OTH Other Derivative, Specify if used 12 BMA Bone...

lin_384_well_metadata.xls

data SampleWellGroup PlateLocation SpecimenID ParticipantID VisitID Date SampleDescription Lot Number InitialDilution Factor Method Specimen 1 A3-A4 4E10 Antibody Lot 1 10 3 Concentration Specimen 2 B3-B4 2F5 Antibody Lot 1 10 3 Concentration Specimen 3 C3-C4 2G12 Antibody Lot 1 10 3 Concentration Specimen 4 D3-D4 sCD4 Antibody Lot 1 10 3 Concentration Specimen 5 E3-E4 HIVIG Antibody...

NAbresults2.xls

Sheet: List ; Plates 1 - 1 Sheet: Plate Sheet: Protocol Sheet: Notes Plate Repeat Well Type Time CPS (CPS) A01 M 9.86111111111111E-5 1199.0 A02 M 1.1273148148148148E-4 94381.0 A03 M 1.2685185185185184E-4 86447.0 A04 M 1.409722222222222E-4 84778.0 A05 M 1.5509259259259258E-4 92852.0 A06 M 1.6921296296296297E-4 91720.0 A07 M 1.8344907407407405E-4 89531.0 A08 M 1.9756944444444444E-4 90989.0 A09 M 2.116898148148148E-4...

NAbresults1.xls

Sheet: List ; Plates 1 - 1 Sheet: Plate Sheet: Protocol Sheet: Notes Plate Repeat Well Type Time CPS (CPS) A01 M 9.86111111111111E-5 1127.0 A02 M 1.1273148148148148E-4 58841.0 A03 M 1.2685185185185184E-4 55047.0 A04 M 1.409722222222222E-4 54635.0 A05 M 1.5532407407407406E-4 67160.0 A06 M 1.6944444444444445E-4 68577.0 A07 M 1.8356481481481482E-4 51202.0 A08 M 1.976851851851852E-4 53183.00000000001...

"libra_info.html" attached to page "Configure Common Parameters"

  Libra Libra is a module within the trans-proteomic pipeline to perform quantification on MS/MS spectra that have multi-reagent labeled peptides. More specifically, at ISB we use Libra on MS/MS spectra of iTRAQ labeled samples.   Patrick Pedrioli ...

Survey Designer: Examples

This topic contains some example surveyCustomize questions to suit specific scenarios. You can also find the JSON metadata structure built in for each type of question below. Include HTML Auto Populate from an Existing Record Auto Populate with the Current User's Email Hidden Radio Group Hidden Question Radio Buttons / Rendering Images Likert Scale Concatenate Values Checkbox (with Conditional...

Advanced_Archive.specimens

advanced_repository_zip/additives.tsv # additives additive_id ldms_additive_code labware_additive_code additive 8 REDTOP 9 PLAINRED 12 LST_HEP 13 LST_CIT 1 ACD ACD Acid Citrate Dextrose 14 ORA Orasure Collection Container 15 AHP Ammonium Heparin 16 PAC Port-a-cul Transport Tube 17 CPD Citrate Phosphate Dextrose 18 PAX PAXgene Blood RNA tube 19 CPH Cell Preparation Tube Heparin 20 PBS...