[
Panorama - Targeted Mass Spectrometry] [
Discovery Proteomics Tutorial] [
MS2 Demo]
LabKey Server provides a broad range of mass spec tools, including:
Targeted Mass Spectrometry
- Panorama - a web-based collaboration tool for Skyline targeted mass spectrometry documents
- Automating instrument quality control / system suitability
- Support for small molecule experiments
Discovery Proteomics
- Managing, analyzing, and sharing high volumes of tandem mass spectrometry data, employing open-source tools provided by the Trans Proteomic Pipeline, developed by the Institute for Systems Biology
- Searches against FASTA sequence databases using tools such as X! Tandem, Sequest, Mascot, or Comet
- Analysis by PeptideProphet and ProteinProphet
- Quantitation analysis on scored results using XPRESS and Q3
Documentation
Mass Spectrometry Installations
LabKey Server powers proteomics repositories at the following institutions: