element <dat:concept>
Namespace:
http://labkey.org/data/xml
Type:
dat:ConceptType
Content:
complex, 1+any attributes, 3 elements
Defined:
locally within element dat:ontology in tableInfo.xsd, see XML source
XML Representation Summary
<dat:concept
    source
 = 
 xs:string
    {any attribute with any namespace}
    >
   
Content: 
 dat:subtree? × dat:labelColumn? × dat:importColumn?
</dat:concept>
Content model elements (3):
dat:importColumn (type xs:string),
dat:labelColumn (type xs:string),
dat:subtree (type xs:string)
Included in content model of elements (1):
dat:ontology (in dat:column : dat:ColumnType)
Definition Locations
XML Source (see within schema source)
<xs:element maxOccurs="1" minOccurs="0" name="concept" type="dat:ConceptType"/>
Attribute Detail
source
Type:
xs:string, predefined
Use:
optional
Defined:
locally, within dat:ConceptType complexType
Short name of the target ontology for this column. E.g. "SNOMED_CT" or "NCI"
XML Source (see within schema source)
<xs:attribute name="source" type="xs:string" use="optional">
<xs:annotation>
<xs:documentation>
Short name of the target ontology for this column. E.g. "SNOMED_CT" or "NCI"
</xs:documentation>
</xs:annotation>
</xs:attribute>
{any attribute with any namespace}
Defined:
within dat:ConceptType complexType
XML Source (see within schema source)
<xs:anyAttribute namespace="##any" processContents="lax"/>
Content Element Detail
dat:importColumn
Type:
xs:string, predefined, simple content
Defined:
locally, within dat:ConceptType complexType
Name of column which holds the imported/provided/reported label for this concept. The LabKey import code will try to use the value provided in the named column to resolve a concept code defined in the source ontology.
XML Source (see within schema source)
<xs:element maxOccurs="1" minOccurs="0" name="importColumn" type="xs:string">
<xs:annotation>
<xs:documentation>
Name of column which holds the imported/provided/reported label for this concept. The LabKey import
code will try to use the value provided in the named column to resolve a concept code defined in the source ontology.
</xs:documentation>
</xs:annotation>
</xs:element>
dat:labelColumn
Type:
xs:string, predefined, simple content
Defined:
locally, within dat:ConceptType complexType
Name of column to hold the label of the resolved concept.
XML Source (see within schema source)
<xs:element maxOccurs="1" minOccurs="0" name="labelColumn" type="xs:string">
<xs:annotation>
<xs:documentation>
Name of column to hold the label of the resolved concept.
</xs:documentation>
</xs:annotation>
</xs:element>
dat:subtree
Type:
xs:string, predefined, simple content
Defined:
locally, within dat:ConceptType complexType
This is a slash ('/') separated path of concepts codes. The values in this column are expected to be children of the tree rooted at this path. This is not yet enforced, but this is used to disambiguate synonyms on import, and to modify the display of concepts that are not in the expected tree.
XML Source (see within schema source)
<xs:element maxOccurs="1" minOccurs="0" name="subtree" type="xs:string">
<xs:annotation>
<xs:documentation>
This is a slash ('/') separated path of concepts codes. The values in this column are expected
to be children of the tree rooted at this path. This is not yet enforced, but this is used to
disambiguate synonyms on import, and to modify the display of concepts that are not in the expected tree.
</xs:documentation>
</xs:annotation>
</xs:element>
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