<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE MAGE-ML SYSTEM "1.0/MAGE-ML.dtd">
<MAGE-ML identifier="Agilent.BRS:MAGE-ML:1">
<Descriptions_assnlist>
<Description>
<Annotations_assnlist>
<OntologyEntry value="Agilent Feature Extraction Software" category="Producer"/>
<OntologyEntry value="8.1.1.1" category="Version"/>
</Annotations_assnlist>
</Description>
</Descriptions_assnlist>
<AuditTrail_assnlist>
<Audit date="2006-03-14 14:10:59" action="creation">
<Performer_assnref>
<Person_ref identifier="Local:Person:proll"/>
</Performer_assnref>
</Audit>
</AuditTrail_assnlist>
<Array_package>
<ArrayGroup_assnlist>
<ArrayGroup barcode="251379110131" identifier="Agilent.BRS:ArrayGroup:251379110131">
<Arrays_assnreflist>
<Array_ref identifier="Agilent.BRS:A:251379110131_A01"/>
</Arrays_assnreflist>
</ArrayGroup>
</ArrayGroup_assnlist>
<Array_assnlist>
<Array identifier="Agilent.BRS:A:251379110131_A01">
<ArrayDesign_assnref>
<ArrayDesign_ref identifier="Agilent.BRS:ArrayDesign:013791_D_20050920"/>
</ArrayDesign_assnref>
<Information_assnref>
<ArrayManufacture_ref identifier="Agilent.BRS:ArrayManufacture:n/a"/>
</Information_assnref>
<ArrayGroup_assnref>
<ArrayGroup_ref identifier="Agilent.BRS:ArrayGroup:251379110131"/>
</ArrayGroup_assnref>
</Array>
</Array_assnlist>
</Array_package>
<BioAssay_package>
<BioAssay_assnlist>
<PhysicalBioAssay identifier="Agilent.BRS:PhysicalBioAssay:251379110131_A01..1">
<PhysicalBioAssayData_assnlist>
<Image URI="US23502338_251379110131_S01_A01_22k_.15.jpg" identifier="Local:Image:1">
<Descriptions_assnlist>
<Description text="Please note that all quantitations are performed on a tif image and not a JPEG. The Image positions reported in this MAGE document refer to positions on the original tif. If a JPEG is supplied with this MAGE document then the position must be divided by the down sampling factor supplied in the Feature Extraction Application Protocol."/>
</Descriptions_assnlist>
<Channels_assnreflist>
<Channel_ref identifier="Local:Channel:Red"/>
<Channel_ref identifier="Local:Channel:Green"/>
</Channels_assnreflist>
<Format_assn>
<OntologyEntry value="jpg" category="image"/>
</Format_assn>
</Image>
</PhysicalBioAssayData_assnlist>
<BioAssayCreation_assn>
<Hybridization identifier="Agilent.BRS:Hybridization:251379110131_A01..1">
<Array_assnref>
<Array_ref identifier="Agilent.BRS:A:251379110131_A01"/>
</Array_assnref>
</Hybridization>
</BioAssayCreation_assn>
<BioAssayTreatments_assnlist>
<ImageAcquisition identifier="Agilent.BRS:ImageAcquisition:251379110131_A01..1">
<Descriptions_assnlist>
<Description text="Warning: The laser power does not fall within expected thresholds. Please contact an Agilent representative. Description: PMT calibration lost! Using factory default settings. Contact your local Agilent support center immediately.Scan successful. "/>
</Descriptions_assnlist>
<ProtocolApplications_assnlist>
<ProtocolApplication activityDate="2006-03-14 10:15:48">
<HardwareApplications_assnlist>
<HardwareApplication serialNumber="US23502338">
<ParameterValues_assnlist>
<ParameterValue value="ANA2101">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DeviceName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="Agilent Technologies Scanner">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:ScannerMake"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="G2505B">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:ScannerModel"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="US23502338">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:ScannerSerialNumber"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="unknown">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Operator"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:ScanNumber"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Red.LASER_POWER_VALUE"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Green.LASER_POWER_VALUE"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="477">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Red.PMT_GAIN_VALUE"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="419">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Green.PMT_GAIN_VALUE"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="65236">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Red.Saturation_Value"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="65170">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Green.Saturation_Value"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="10">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:MICRONS_PER_PIXEL_X"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="10">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:MICRONS_PER_PIXEL_Y"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="626.256">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GlassThickness"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="22.26">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Red.DarkOffsetAverage"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="22.26">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Green.DarkOffsetAverage"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:PercentAutoFocusHold"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="true">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DarkOffsetSubtracted"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="unknown">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Description"/>
</ParameterType_assnref>
</ParameterValue>
</ParameterValues_assnlist>
<Hardware_assnref>
<Hardware_ref identifier="Agilent.BRS:Hardware:US23502338"/>
</Hardware_assnref>
</HardwareApplication>
</HardwareApplications_assnlist>
<Performers_assnreflist>
<Person_ref identifier="Local:Person:unknown"/>
</Performers_assnreflist>
<Protocol_assnref>
<Protocol_ref identifier="Local:Protocol:Agilent_Scan"/>
</Protocol_assnref>
</ProtocolApplication>
</ProtocolApplications_assnlist>
<Target_assnref>
<PhysicalBioAssay_ref identifier="Agilent.BRS:PhysicalBioAssay:251379110131_A01..1"/>
</Target_assnref>
</ImageAcquisition>
</BioAssayTreatments_assnlist>
</PhysicalBioAssay>
<MeasuredBioAssay name="US23502338_251379110131_S01_A01_22k_.15" identifier="Agilent.BRS:MeasuredBioAssay:251379110131_A01..1">
<Channels_assnreflist>
<Channel_ref identifier="Local:Channel:Red"/>
<Channel_ref identifier="Local:Channel:Green"/>
</Channels_assnreflist>
<FeatureExtraction_assn>
<FeatureExtraction identifier="251379110131_A01..1">
<ProtocolApplications_assnlist>
<ProtocolApplication activityDate="2006-03-14 14:10:59">
<SoftwareApplications_assnlist>
<SoftwareApplication version="8.1.1.1" releaseDate="2005-04-26 19:41:36">
<ParameterValues_assnlist>
<ParameterValue value="22k_.15 (Read Only)">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Protocol_Name"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="04-Nov-2005 14:41">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Protocol_date"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="03-14-2006 10:15:48">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Scan_Date"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="Agilent Technologies Scanner G2505B US23502338">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Scan_ScannerName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="2">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Scan_NumChannels"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="10">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Scan_MicronsPerPixelX"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="10">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Scan_MicronsPerPixelY"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="d46c1a8b-d0a3-4ef1-a493-1e361cc461cf">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Scan_OriginalGUID"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="013791_D_20050920">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_Name"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="20-Sep-2005 00:00">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_Date"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_NumSubGridRows"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_NumSubGridCols"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="105">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_NumRows"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="215">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_NumCols"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_OffsetX"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_OffsetY"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="135">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_NomSpotWidth"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="135">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Grid_NomSpotHeight"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="251379110131_A01">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_Barcode"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="C:\Input\US23502338_251379110131_S01_A01.tif">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_ScanFileName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="US23502338_251379110131_S01_A01">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_ArrayName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="013791_D_20050920.xml">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_DesignFileName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="013791_D_20050920">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_PatternName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="proll">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_UserName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="GRAPHICS-XP">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_ComputerName"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="fa7959eb-2f0d-4714-885b-da12a9c0324b">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_ScanFileGUID"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="8.1.1.1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_Version"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_placementMode"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_ptsPerSide"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="7">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_minPeakSpacing"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.666667">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_blocksizeAllowance"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="6">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_initialFilterWidth"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_coarseFilterWidth"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="3">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_fineFilterWidth"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="6">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_lineHalfWidth"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="2">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_halfDepth"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.015">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_maximumSlope"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_gridWithChannel"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1.5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:GridPlacement_thinOutCoeff"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="8.1.1.1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_Version"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="10">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_weakthresh"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_RegionOfInterestMultiplier"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.001">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_convergence_factor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_max_em_iter"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.75">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_max_reject_ratio"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.45">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_kmeans_rad_reject_factor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1.5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_kmeans_cen_reject_factor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="2.5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_kmeans_moi_reject_factor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_isspot_factor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="3">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_isweakspot_factor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1.5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_BackgroundThreshold"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_UseNominalDiameterFromGT"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="3">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_RejectMethod"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1.42">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_StatBoundFeat"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1.42">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_StatBoundBG"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_SpotStatsMethod"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.65">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_CookiePercentage"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1.2">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_ExclusionZonePercentage"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:SpotAnalysis_EstimateLocalRadius"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="8.1.1.1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_Version"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_NonUnifOLOn"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.0081">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_FeatATerm"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="320">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_FeatBTerm"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="600">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_FeatCTerm"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.0225">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_BGATerm"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="320">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_BGBTerm"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="600">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_BGCTerm"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_PopnOLOn"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="10">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_MinPopulation"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1.42">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:OutlierFlagger_IQRatio"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="8.1.1.1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_Version"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="7">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_BGSubMethod"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.01">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_MaxPVal"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="2.6">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_WellAboveMulti"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_BackgroundCorrectionOn"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_CalculateSurfaceMetricsOn"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_SpatialDetrendOn"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_DetrendLowPassFilter"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_DetrendLowPassPercentage"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="10">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_DetrendLowPassWindow"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_DetrendLowPassIncrement"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_AdditiveDetrendFeatureSet"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.2">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:BGSubtractor_DetrendNeighborhoodSize"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="8.1.1.1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_Version"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="6">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_SelectMethod"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_ArePosNegCtrlsOK"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_SignalCharacteristics"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_CorrMethod"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.25">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_LOWESSSmoothFactor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="2">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_LOWESSNumSteps"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.05">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_RankTolerance"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:DyeNorm_IsBGPopnOLOn"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="8.1.1.1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Ratio_Version"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="4">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Ratio_PegLogRatioValue"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.15">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Red.MULTIPLICATIVE_ERROR"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.15">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Green.MULTIPLICATIVE_ERROR"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Ratio_UseSurrogates"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Ratio_AutoEstimateAddErrorRed"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Ratio_AutoEstimateAddErrorGreen"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Ratio_MultNcAutoEstimate"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="4">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Ratio_MultRMSAutoEstimate"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:QCMetrics_UseSpikeIns"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:QCMetrics_minReplicatePopulation"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.01">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:QCMetrics_differentialExpressionPValue"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="0.5">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:QCMetrics_MaxEdgeDefectThreshold"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="8.1.1.1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_Version"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="1">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:FeatureExtractor_SingleTextFileOutput"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="4">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:JPEG_DownSampling_Factor"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="82.969068">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Red.ADDITIVE_ERROR"/>
</ParameterType_assnref>
</ParameterValue>
<ParameterValue value="270.033657">
<ParameterType_assnref>
<Parameter_ref identifier="Agilent.BRS:Parameter:Green.ADDITIVE_ERROR"/>
</ParameterType_assnref>
</ParameterValue>
</ParameterValues_assnlist>
<Software_assnref>
<Software_ref identifier="Agilent.BRS:Software:version"/>
</Software_assnref>
</SoftwareApplication>
</SoftwareApplications_assnlist>
<Performers_assnreflist>
<Person_ref identifier="Local:Person:proll"/>
</Performers_assnreflist>
<Protocol_assnref>
<Protocol_ref identifier="Local:Protocol:22k_.15 (Read Only)"/>
</Protocol_assnref>
</ProtocolApplication>
</ProtocolApplications_assnlist>
<PhysicalBioAssaySource_assnref>
<PhysicalBioAssay_ref identifier="Agilent.BRS:PhysicalBioAssay:251379110131_A01..1"/>
</PhysicalBioAssaySource_assnref>
</FeatureExtraction>
</FeatureExtraction_assn>
<MeasuredBioAssayData_assnreflist>
<MeasuredBioAssayData_ref identifier="Agilent.BRS:MeasuredBioAssayData: 251379110131_A01..1"/>
</MeasuredBioAssayData_assnreflist>
</MeasuredBioAssay>
</BioAssay_assnlist>
</BioAssay_package>
<QuantitationType_package>
<QuantitationType_assnlist>
<SpecializedQuantitationType name="PositionX" identifier="Local:QT:X_IMAGE_POSITION" isBackground="false">
<Descriptions_assnlist>
<Description text="Found X coordinate of the feature centroid currently reported in Pixels"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="PositionY" identifier="Local:QT:Y_IMAGE_POSITION" isBackground="false">
<Descriptions_assnlist>
<Description text="Found Y coordinate of the feature centroid currently reported in Pixels"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<Ratio name="LogRatio" identifier="Local:QT:LogRatio" isBackground="false">
<Descriptions_assnlist>
<Description text="log(REDsignal/GREENsignal) per feature. Signals in both channels are post dye normalization If SURROGATES are disabled, then this value will be set to: -2 if DyeNormRedSig <= 0.0 &DyeNormGreenSig > 0.0; 2 if DyeNormRedSig > 0.0 & DyeNormGreenSig <= 0.0; and 0 if DyeNormRedSig <= 0.0 & DyeNormGreenSig <= 0.0"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="log" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</Ratio>
<Error name="LogRatioError" identifier="Local:QT:LogRatioError" isBackground="false">
<Descriptions_assnlist>
<Description text="LogRatioError = error of the log ratio calculated according to the error model chosen. If SURROGATES are disabled, then this value will be set to if DyeNormRedSig <= 0.0 OR DyeNormGreenSig <= 0.0"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="log" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<Ratio_ref identifier="Local:QT:LogRatio"/>
</TargetQuantitationType_assnref>
</Error>
<PValue name="PValueLogRatio" identifier="Local:QT:PValueLogRatio" isBackground="false">
<Descriptions_assnlist>
<Description text="Significance level of the Log Ratio computed for a feature"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="percent" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<Ratio_ref identifier="Local:QT:LogRatio"/>
</TargetQuantitationType_assnref>
</PValue>
<SpecializedQuantitationType name="gSurrogateUsed" identifier="Local:QT:gSurrogateUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="The green surrogate value used. "/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rSurrogateUsed" identifier="Local:QT:rSurrogateUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="The red surrogate value used."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsFound" identifier="Local:QT:gIsFound" isBackground="false">
<Descriptions_assnlist>
<Description text="A boolean used to flag found (strong) features. The flag is applied independently in each channel. A feature is considered found if the found spot centroid is within the bounds of the spot deviation limit with respect to corresponding nominal centroid. NOTE: IsFound was previously termed IsStrong."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsFound" identifier="Local:QT:rIsFound" isBackground="false">
<Descriptions_assnlist>
<Description text="A boolean used to flag found (strong) features. The flag is applied independently in each channel. A feature is considered found if the found spot centroid is within the bounds of the spot deviation limit with respect to corresponding nominal centroid. NOTE: IsFound was previously termed IsStrong."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<DerivedSignal name="gProcessedSignal" identifier="Local:QT:Green.DerivedSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="The propagated feature signal, per channel, used for computation of log ratio"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</DerivedSignal>
<DerivedSignal name="rProcessedSignal" identifier="Local:QT:Red.DerivedSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="The propagated feature signal, per channel, used for computation of log ratio"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</DerivedSignal>
<Error name="gProcessedSigError" identifier="Local:QT:Green.ProcessedSigError" isBackground="false">
<Descriptions_assnlist>
<Description text="Standard error of propagated feature signal, per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<DerivedSignal_ref identifier="Local:QT:Green.DerivedSignal"/>
</TargetQuantitationType_assnref>
</Error>
<Error name="rProcessedSigError" identifier="Local:QT:Red.ProcessedSigError" isBackground="false">
<Descriptions_assnlist>
<Description text="Standard error of propagated feature signal, per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<DerivedSignal_ref identifier="Local:QT:Red.DerivedSignal"/>
</TargetQuantitationType_assnref>
</Error>
<SpecializedQuantitationType name="gNumPixOLHi" identifier="Local:QT:gNumPixOLHi" isBackground="false">
<Descriptions_assnlist>
<Description text="Number of outlier pixels per feature with intensity > upper threshold set via the pixel outlier rejection method. The number is computed independently in each channel. These pixels are omitted from all subsequent calculations."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rNumPixOLHi" identifier="Local:QT:rNumPixOLHi" isBackground="false">
<Descriptions_assnlist>
<Description text="Number of outlier pixels per feature with intensity > upper threshold set via the pixel outlier rejection method. The number is computed independently in each channel. These pixels are omitted from all subsequent calculations."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gNumPixOLLo" identifier="Local:QT:gNumPixOLLo" isBackground="false">
<Descriptions_assnlist>
<Description text="Number of outlier pixels per feature with intensity < lower threshold set via the pixel outlier rejection method. The number is computed independently in each channel. NOTE: The pixel outlier method is the ONLY step that removes data in Feature Extraction."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rNumPixOLLo" identifier="Local:QT:rNumPixOLLo" isBackground="false">
<Descriptions_assnlist>
<Description text="Number of outlier pixels per feature with intensity < lower threshold set via the pixel outlier rejection method. The number is computed independently in each channel. NOTE: The pixel outlier method is the ONLY step that removes data in Feature Extraction."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gNumPix" identifier="Local:QT:gNumPix" isBackground="false">
<Descriptions_assnlist>
<Description text="Total number of pixels used to compute feature statistics; ie. total number of inlier pixels/per spot, computed independently in each channel. The number of inlier pixels are the same in both channels."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rNumPix" identifier="Local:QT:rNumPix" isBackground="false">
<Descriptions_assnlist>
<Description text="Total number of pixels used to compute feature statistics; ie. total number of inlier pixels/per spot, computed independently in each channel. The number of inlier pixels are the same in both channels."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<MeasuredSignal name="gMeanSignal" identifier="Local:QT:Green.MeasuredSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="Raw mean signal of feature in green channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</MeasuredSignal>
<MeasuredSignal name="rMeanSignal" identifier="Local:QT:Red.MeasuredSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="Raw mean signal of feature in red channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</MeasuredSignal>
<SpecializedQuantitationType name="gMedianSignal" identifier="Local:QT:gMedianSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="Raw median signal of feature in green channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rMedianSignal" identifier="Local:QT:rMedianSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="Raw median signal of feature in red channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<Error name="gPixSDev" identifier="Local:QT:Green.PixSDev" isBackground="false">
<Descriptions_assnlist>
<Description text="Standard deviation of all inlier pixels per feature; this is computed independently in each channel."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<MeasuredSignal_ref identifier="Local:QT:Green.MeasuredSignal"/>
</TargetQuantitationType_assnref>
</Error>
<Error name="rPixSDev" identifier="Local:QT:Red.PixSDev" isBackground="false">
<Descriptions_assnlist>
<Description text="Standard deviation of all inlier pixels per feature; this is computed independently in each channel."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<MeasuredSignal_ref identifier="Local:QT:Red.MeasuredSignal"/>
</TargetQuantitationType_assnref>
</Error>
<SpecializedQuantitationType name="gBGNumPix" identifier="Local:QT:gBGNumPix" isBackground="false">
<Descriptions_assnlist>
<Description text="Total Number of pixels used to compute Local BG statistics per spot; ie. Total number of BG inlier pixels. This number is computed independently in each channel."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rBGNumPix" identifier="Local:QT:rBGNumPix" isBackground="false">
<Descriptions_assnlist>
<Description text="Total Number of pixels used to compute Local BG statistics per spot; ie. Total number of BG inlier pixels. This number is computed independently in each channel."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<MeasuredSignal name="gBGMeanSignal" identifier="Local:QT:Green.Background" isBackground="true">
<Descriptions_assnlist>
<Description text="Mean local background signal (local to corresponding feature) computed per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</MeasuredSignal>
<MeasuredSignal name="rBGMeanSignal" identifier="Local:QT:Red.Background" isBackground="true">
<Descriptions_assnlist>
<Description text="Mean local background signal (local to corresponding feature) computed per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</MeasuredSignal>
<SpecializedQuantitationType name="gBGMedianSignal" identifier="Local:QT:gBGMedianSignal" isBackground="true">
<Descriptions_assnlist>
<Description text="Median local background signal (local to corresponding feature) computed per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rBGMedianSignal" identifier="Local:QT:rBGMedianSignal" isBackground="true">
<Descriptions_assnlist>
<Description text="Median local background signal (local to corresponding feature) computed per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<Error name="gBGPixSDev" identifier="Local:QT:Green.BGPixSDev" isBackground="true">
<Descriptions_assnlist>
<Description text="Standard deviation of all inlier pixels per Local BG of each feature, computed independently in each channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<MeasuredSignal_ref identifier="Local:QT:Green.Background"/>
</TargetQuantitationType_assnref>
</Error>
<Error name="rBGPixSDev" identifier="Local:QT:Red.BGPixSDev" isBackground="true">
<Descriptions_assnlist>
<Description text="Standard deviation of all inlier pixels per Local BG of each feature, computed independently in each channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<MeasuredSignal_ref identifier="Local:QT:Red.Background"/>
</TargetQuantitationType_assnref>
</Error>
<SpecializedQuantitationType name="gNumSatPix" identifier="Local:QT:gNumSatPix" isBackground="false">
<Descriptions_assnlist>
<Description text="Total number of saturated pixels per feature, computed per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rNumSatPix" identifier="Local:QT:rNumSatPix" isBackground="false">
<Descriptions_assnlist>
<Description text="Total number of saturated pixels per feature, computed per channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsSaturated" identifier="Local:QT:gIsSaturated" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is saturated or not. A feature is saturated if 50% of the pixels in a feature are above the saturation threshold. A value of 1 means saturated."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsSaturated" identifier="Local:QT:rIsSaturated" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is saturated or not. A feature is saturated if 50% of the pixels in a feature are above the saturation threshold. A value of 1 means saturated."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="PixCorrelation" identifier="Local:QT:PixCorrelation" isBackground="false">
<Descriptions_assnlist>
<Description text="Ratio of estimated feature covariance in RedGreen space to product of feature Standard Deviation in Red Green space. The covariance of two features measures their tendency to vary together, i.e., to co-vary. In this case, it is a cumulative quantitation of the tendency of pixels belonging to a particular feature in Red and Green spaces to co-vary."/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="BGPixCorrelation" identifier="Local:QT:BGPixCorrelation" isBackground="true">
<Descriptions_assnlist>
<Description text="Ratio of estimated feature covariance in RedGreen space to product of feature Standard Deviation in Red Green space. The covariance of two features measures their tendency to vary together, i.e., to co-vary. In this case, it is a cumulative quantitation of the tendency of pixels belonging to a particular feature in Red and Green spaces to co-vary."/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsFeatNonUnifOL" identifier="Local:QT:gIsFeatNonUnifOL" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is a NonUniformity Outlier or not. A feature is non-uniform if the pixel noise of feature exceeds a threshold established for a 'uniform' feature. A 1 indicates Feature is a non-uniformity outlier."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsFeatNonUnifOL" identifier="Local:QT:rIsFeatNonUnifOL" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is a NonUniformity Outlier or not. A feature is non-uniform if the pixel noise of feature exceeds a threshold established for a 'uniform' feature. A 1 indicates Feature is a non-uniformity outlier."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsBGNonUnifOL" identifier="Local:QT:gIsBGNonUnifOL" isBackground="true">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a background is a NonUniformity Outlier or not. A feature is non-uniform if the pixel noise of feature exceeds a threshold established for a 'uniform' feature. A 1 indicates Feature is a non-uniformity outlier."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsBGNonUnifOL" identifier="Local:QT:rIsBGNonUnifOL" isBackground="true">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a background is a NonUniformity Outlier or not. A feature is non-uniform if the pixel noise of feature exceeds a threshold established for a 'uniform' feature. A 1 indicates Feature is a non-uniformity outlier."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsFeatPopnOL" identifier="Local:QT:gIsFeatPopnOL" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is a Population Outlier or not. Probes with replicate features on a microarray are examined using population statistics. A feature is a population outlier if its signal is less than a lower threshold or exceeds an upper threshold determined using the interquartile range (i.e., IQR) of the population. A 1 indicates Feature is a population outlier"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsFeatPopnOL" identifier="Local:QT:rIsFeatPopnOL" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is a Population Outlier or not. Probes with replicate features on a microarray are examined using population statistics. A feature is a population outlier if its signal is less than a lower threshold or exceeds an upper threshold determined using the interquartile range (i.e., IQR) of the population. A 1 indicates Feature is a population outlier"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsBGPopnOL" identifier="Local:QT:gIsBGPopnOL" isBackground="true">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a background is a Population Outlier or not. Probes with replicate features on a microarray are examined using population statistics. A feature is a population outlier if its signal is less than a lower threshold or exceeds an upper threshold determined using the interquartile range (i.e., IQR) of the population. A 1 indicates background is a population outlier"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsBGPopnOL" identifier="Local:QT:rIsBGPopnOL" isBackground="true">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a background is a Population Outlier or not. Probes with replicate features on a microarray are examined using population statistics. A feature is a population outlier if its signal is less than a lower threshold or exceeds an upper threshold determined using the interquartile range (i.e., IQR) of the population. A 1 indicates background is a population outlier"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="IsManualFlag" identifier="Local:QT:IsManualFlag" isBackground="false">
<Descriptions_assnlist>
<Description text="If a feature has been moved manually this flag will be set to 1"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gBGSubSignal" identifier="Local:QT:gBGSubSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="The net green signal following the subtraction of the background from the raw mean green signal"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rBGSubSignal" identifier="Local:QT:rBGSubSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="The net red signal following the subtraction of the background from the raw mean red signal"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<Error name="gBGSubSigError" identifier="Local:QT:gBGSubSigError" isBackground="false">
<Descriptions_assnlist>
<Description text="Propagated standard error as computed on net green background subtracted signal"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<SpecializedQuantitationType_ref identifier="Local:QT:gBGSubSignal"/>
</TargetQuantitationType_assnref>
</Error>
<Error name="rBGSubSigError" identifier="Local:QT:rBGSubSigError" isBackground="false">
<Descriptions_assnlist>
<Description text="Propagated standard error as computed on net red background subtracted signal"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<SpecializedQuantitationType_ref identifier="Local:QT:rBGSubSignal"/>
</TargetQuantitationType_assnref>
</Error>
<SpecializedQuantitationType name="BGSubSigCorrelation" identifier="Local:QT:BGSubSigCorrelation" isBackground="false">
<Descriptions_assnlist>
<Description text="Ratio of estimated background subtracted feature signal covariance in RG space to product of background subtracted feature Standard Deviation in RG space"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsPosAndSignif" identifier="Local:QT:gIsPosAndSignif" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if the mean signal of a feature is greater than the corresponding background and if this difference is significant. Significance is established via a 2-sided t-test against the user-settable maximum p-value. A 1 indicates Feature is positive and significant above background."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsPosAndSignif" identifier="Local:QT:rIsPosAndSignif" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if the mean signal of a feature is greater than the corresponding background and if this difference is significant. Significance is established via a 2-sided t-test against the user-settable maximum p-value. A 1 indicates Feature is positive and significant above background."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gPValFeatEqBG" identifier="Local:QT:gPValFeatEqBG" isBackground="false">
<Descriptions_assnlist>
<Description text="P-value from t-test of significance between green Mean signal and green background"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rPValFeatEqBG" identifier="Local:QT:rPValFeatEqBG" isBackground="false">
<Descriptions_assnlist>
<Description text="P-value from t-test of significance between red Mean signal and red background"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gNumBGUsed" identifier="Local:QT:gNumBGUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="A count of the number of background pixels used in the Green Channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rNumBGUsed" identifier="Local:QT:rNumBGUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="A Count of the number of background pixels used in the Red channel."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gIsWellAboveBG" identifier="Local:QT:gIsWellAboveBG" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is WellAbove Background or not. A feature must be gIsPosAndSignif and additionally the gBGSubSignal must be greater than 2.6*g(r)BG_SD. A 1 indicates a feature IsWellAboveBG"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rIsWellAboveBG" identifier="Local:QT:rIsWellAboveBG" isBackground="false">
<Descriptions_assnlist>
<Description text="Boolean flag indicating if a feature is WellAbove Background or not. A feature must be gIsPosAndSignif and additionally the gBGSubSignal must be greater than 2.6*g(r)BG_SD. A 1 indicates a feature IsWellAboveBG"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gBGUsed" identifier="Local:QT:gBGUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="Background value subtracted from the raw mean signal to generate the BG subtracted signal; this value is computed per channel. If global BG subtraction is used the column is identical for every feature in a given channel."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rBGUsed" identifier="Local:QT:rBGUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="Background value subtracted from the raw mean signal to generate the BG subtracted signal; this value is computed per channel. If global BG subtraction is used the column is identical for every feature in a given channel."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<Error name="gBGSDUsed" identifier="Local:QT:gBGSDUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="Standard deviation of background used in green channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<SpecializedQuantitationType_ref identifier="Local:QT:gBGUsed"/>
</TargetQuantitationType_assnref>
</Error>
<Error name="rBGSDUsed" identifier="Local:QT:rBGSDUsed" isBackground="false">
<Descriptions_assnlist>
<Description text="Standard deviation of background used in red channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<SpecializedQuantitationType_ref identifier="Local:QT:rBGUsed"/>
</TargetQuantitationType_assnref>
</Error>
<SpecializedQuantitationType name="IsNormalization" identifier="Local:QT:IsNormalization" isBackground="false">
<Descriptions_assnlist>
<Description text="A boolean flag which indicates if a feature is used to measure dye bias. A 1 incidates the value was used"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gDyeNormSignal" identifier="Local:QT:Green.DyeNormSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="The dye normalized signal in the indicated channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rDyeNormSignal" identifier="Local:QT:Red.DyeNormSignal" isBackground="false">
<Descriptions_assnlist>
<Description text="The dye normalized signal in the indicated channel"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<Error name="gDyeNormError" identifier="Local:QT:Green.DyeNormError" isBackground="false">
<Descriptions_assnlist>
<Description text="The standard error associated with the dye normalized signal."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<SpecializedQuantitationType_ref identifier="Local:QT:Red.DyeNormSignal"/>
</TargetQuantitationType_assnref>
</Error>
<Error name="rDyeNormError" identifier="Local:QT:Red.DyeNormError" isBackground="false">
<Descriptions_assnlist>
<Description text="The standard error associated with the dye normalized signal."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
<TargetQuantitationType_assnref>
<Error_ref identifier="Local:QT:Red.DyeNormError"/>
</TargetQuantitationType_assnref>
</Error>
<SpecializedQuantitationType name="DyeNormCorrelation" identifier="Local:QT:DyeNormCorrelation" isBackground="false">
<Descriptions_assnlist>
<Description text="Dye normalized red and green pixel correlation"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="ErrorModel" identifier="Local:QT:ErrorModel" isBackground="false">
<Descriptions_assnlist>
<Description text="ErrorModel Indicates the error model that the user chose for feature extraction. A 0 indicates use of the Propagated Error Model. A 1 indicates use of the Universal Error Model."/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="integer" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="xDev" identifier="Local:QT:xDev" isBackground="false">
<Descriptions_assnlist>
<Description text="Used to Compute the Log Ratio PValue"/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="log" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gSpatialDetrendIsInFilteredSet" identifier="Local:QT:gSpatialDetrendIsInFilteredSet" isBackground="false">
<Descriptions_assnlist>
<Description text="Set to true for a given feature if it is part of the filtered set used to fit the surface measuring the spatial trend across the microarray. This feature is considered part of the locally weighted x% of the features."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rSpatialDetrendIsInFilteredSet" identifier="Local:QT:rSpatialDetrendIsInFilteredSet" isBackground="false">
<Descriptions_assnlist>
<Description text="Set to true for a given feature if it is part of the filtered set used to fit the surface measuring the spatial trend across the microarray. This feature is considered part of the locally weighted x% of the features."/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="gSpatialDetrendSurfaceValue" identifier="Local:QT:gSpatialDetrendSurfaceValue" isBackground="false">
<Descriptions_assnlist>
<Description text="Value of the smoothed surface derived from the set of features that are part of SpatialDetrendIsInFilteredSet"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Green"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="rSpatialDetrendSurfaceValue" identifier="Local:QT:rSpatialDetrendSurfaceValue" isBackground="false">
<Descriptions_assnlist>
<Description text="Value of the smoothed surface derived from the set of features that are part of SpatialDetrendIsInFilteredSet"/>
</Descriptions_assnlist>
<Channel_assnref>
<Channel_ref identifier="Local:Channel:Red"/>
</Channel_assnref>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<SpecializedQuantitationType name="IsUsedBGAdjust" identifier="Local:QT:IsUsedBGAdjust" isBackground="false">
<Descriptions_assnlist>
<Description text="A boolean used to flag features used for computation of global BG offset. A 1 indicates the feature was used."/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="float" category="DataType"/>
</DataType_assn>
</SpecializedQuantitationType>
<Failed name="Failed" identifier="Local:QT:Failed" isBackground="false">
<Descriptions_assnlist>
<Description text="Set to one if the quantitation values of a feature are considered bad enough to thrown out in the higher level analysis. Features are thrown out if both channels are saturated or if either channel is a non-uniform outlier. A feature can be failed from outside of feature extraction via setting this flag when loading the design or grid."/>
</Descriptions_assnlist>
<Scale_assn>
<OntologyEntry value="linear" category="Scale"/>
</Scale_assn>
<DataType_assn>
<OntologyEntry value="boolean" category="DataType"/>
</DataType_assn>
</Failed>
</QuantitationType_assnlist>
</QuantitationType_package>
<BioAssayData_package>
<BioAssayDimension_assnlist>
<BioAssayDimension identifier="Agilent.BRS:BioAssayDimension:1">
<BioAssays_assnreflist>
<MeasuredBioAssay_ref identifier="Agilent.BRS:MeasuredBioAssay:251379110131_A01..1"/>
</BioAssays_assnreflist>
</BioAssayDimension>
</BioAssayDimension_assnlist>
<DesignElementDimension_assnlist>
<FeatureDimension identifier="Agilent.BRS:FeatureDimension:1">
<ContainedFeatures_assnreflist>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.1"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.2"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.3"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.4"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.5"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.6"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.7"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.8"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.9"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.10"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.11"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.12"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.13"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.14"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.15"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.16"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.17"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.18"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.19"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.20"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.21"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.22"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.23"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.24"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.25"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.26"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.27"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.28"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.29"/>
<Feature_ref identifier="Agilent.BRS:F:013791_D_20050920.30"/>
</ContainedFeatures_assnreflist>
</FeatureDimension>
</DesignElementDimension_assnlist>
<QuantitationTypeDimension_assnlist>
<QuantitationTypeDimension identifier="Agilent.BRS:QuantitationTypeDimension:1">
<QuantitationTypes_assnreflist>
<SpecializedQuantitationType_ref identifier="Local:QT:X_IMAGE_POSITION"/>
<SpecializedQuantitationType_ref identifier="Local:QT:Y_IMAGE_POSITION"/>
<Ratio_ref identifier="Local:QT:LogRatio"/>
<Error_ref identifier="Local:QT:LogRatioError"/>
<PValue_ref identifier="Local:QT:PValueLogRatio"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gSurrogateUsed"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rSurrogateUsed"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsFound"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsFound"/>
<DerivedSignal_ref identifier="Local:QT:Green.DerivedSignal"/>
<DerivedSignal_ref identifier="Local:QT:Red.DerivedSignal"/>
<Error_ref identifier="Local:QT:Green.ProcessedSigError"/>
<Error_ref identifier="Local:QT:Red.ProcessedSigError"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gNumPixOLHi"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rNumPixOLHi"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gNumPixOLLo"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rNumPixOLLo"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gNumPix"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rNumPix"/>
<MeasuredSignal_ref identifier="Local:QT:Green.MeasuredSignal"/>
<MeasuredSignal_ref identifier="Local:QT:Red.MeasuredSignal"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gMedianSignal"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rMedianSignal"/>
<Error_ref identifier="Local:QT:Green.PixSDev"/>
<Error_ref identifier="Local:QT:Red.PixSDev"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gBGNumPix"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rBGNumPix"/>
<MeasuredSignal_ref identifier="Local:QT:Green.Background"/>
<MeasuredSignal_ref identifier="Local:QT:Red.Background"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gBGMedianSignal"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rBGMedianSignal"/>
<Error_ref identifier="Local:QT:Green.BGPixSDev"/>
<Error_ref identifier="Local:QT:Red.BGPixSDev"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gNumSatPix"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rNumSatPix"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsSaturated"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsSaturated"/>
<SpecializedQuantitationType_ref identifier="Local:QT:PixCorrelation"/>
<SpecializedQuantitationType_ref identifier="Local:QT:BGPixCorrelation"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsFeatNonUnifOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsFeatNonUnifOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsBGNonUnifOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsBGNonUnifOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsFeatPopnOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsFeatPopnOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsBGPopnOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsBGPopnOL"/>
<SpecializedQuantitationType_ref identifier="Local:QT:IsManualFlag"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gBGSubSignal"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rBGSubSignal"/>
<Error_ref identifier="Local:QT:gBGSubSigError"/>
<Error_ref identifier="Local:QT:rBGSubSigError"/>
<SpecializedQuantitationType_ref identifier="Local:QT:BGSubSigCorrelation"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsPosAndSignif"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsPosAndSignif"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gPValFeatEqBG"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rPValFeatEqBG"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gNumBGUsed"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rNumBGUsed"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gIsWellAboveBG"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rIsWellAboveBG"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gBGUsed"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rBGUsed"/>
<Error_ref identifier="Local:QT:gBGSDUsed"/>
<Error_ref identifier="Local:QT:rBGSDUsed"/>
<SpecializedQuantitationType_ref identifier="Local:QT:IsNormalization"/>
<SpecializedQuantitationType_ref identifier="Local:QT:Green.DyeNormSignal"/>
<SpecializedQuantitationType_ref identifier="Local:QT:Red.DyeNormSignal"/>
<Error_ref identifier="Local:QT:Green.DyeNormError"/>
<Error_ref identifier="Local:QT:Red.DyeNormError"/>
<SpecializedQuantitationType_ref identifier="Local:QT:DyeNormCorrelation"/>
<SpecializedQuantitationType_ref identifier="Local:QT:ErrorModel"/>
<SpecializedQuantitationType_ref identifier="Local:QT:xDev"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gSpatialDetrendIsInFilteredSet"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rSpatialDetrendIsInFilteredSet"/>
<SpecializedQuantitationType_ref identifier="Local:QT:gSpatialDetrendSurfaceValue"/>
<SpecializedQuantitationType_ref identifier="Local:QT:rSpatialDetrendSurfaceValue"/>
<SpecializedQuantitationType_ref identifier="Local:QT:IsUsedBGAdjust"/>
<Failed_ref identifier="Local:QT:Failed"/>
</QuantitationTypes_assnreflist>
</QuantitationTypeDimension>
</QuantitationTypeDimension_assnlist>
<BioAssayData_assnlist>
<MeasuredBioAssayData name="US23502338_251379110131_S01_A01_22k_.15" identifier="Agilent.BRS:MeasuredBioAssayData: 251379110131_A01..1">
<SummaryStatistics_assnlist>
<NameValueType name="gDarkOffsetAverage" type="float" value="21.875"/>
<NameValueType name="rDarkOffsetAverage" type="float" value="22.26"/>
<NameValueType name="gDarkOffsetMedian" type="float" value="22"/>
<NameValueType name="rDarkOffsetMedian" type="float" value="22"/>
<NameValueType name="gDarkOffsetStdDev" type="float" value="4.81619"/>
<NameValueType name="rDarkOffsetStdDev" type="float" value="5.82623"/>
<NameValueType name="gDarkOffsetNumPts" type="integer" value="1000"/>
<NameValueType name="rDarkOffsetNumPts" type="integer" value="1000"/>
<NameValueType name="gAvgSig2BkgE1A" type="float" value="1.1324"/>
<NameValueType name="rAvgSig2BkgE1A" type="float" value="1.38136"/>
<NameValueType name="gAvgSig2BkgNegCtrl" type="float" value="1.02247"/>
<NameValueType name="rAvgSig2BkgNegCtrl" type="float" value="0.985298"/>
<NameValueType name="gRatioSig2BkgE1a_NegCtrl" type="float" value="1.10751"/>
<NameValueType name="rRatioSig2BkgE1a_NegCtrl" type="float" value="1.40198"/>
<NameValueType name="gNumSatFeat" type="integer" value="2"/>
<NameValueType name="rNumSatFeat" type="integer" value="3"/>
<NameValueType name="gLocalBGInlierNetAve" type="float" value="20.9143"/>
<NameValueType name="rLocalBGInlierNetAve" type="float" value="27.198"/>
<NameValueType name="gLocalBGInlierAve" type="float" value="42.7893"/>
<NameValueType name="rLocalBGInlierAve" type="float" value="49.458"/>
<NameValueType name="gLocalBGInlierSDev" type="float" value="1.11068"/>
<NameValueType name="rLocalBGInlierSDev" type="float" value="0.567609"/>
<NameValueType name="gLocalBGInlierNum" type="integer" value="19733"/>
<NameValueType name="rLocalBGInlierNum" type="integer" value="21067"/>
<NameValueType name="gGlobalBGInlierAve" type="float" value="42.7893"/>
<NameValueType name="rGlobalBGInlierAve" type="float" value="49.458"/>
<NameValueType name="gGlobalBGInlierSDev" type="float" value="1.11068"/>
<NameValueType name="rGlobalBGInlierSDev" type="float" value="0.567609"/>
<NameValueType name="gGlobalBGInlierNum" type="integer" value="19733"/>
<NameValueType name="rGlobalBGInlierNum" type="integer" value="21067"/>
<NameValueType name="gNumFeatureNonUnifOL" type="integer" value="17"/>
<NameValueType name="rNumFeatureNonUnifOL" type="integer" value="53"/>
<NameValueType name="gNumPopnOL" type="integer" value="32"/>
<NameValueType name="rNumPopnOL" type="integer" value="10"/>
<NameValueType name="gNumNonUnifBGOL" type="integer" value="0"/>
<NameValueType name="rNumNonUnifBGOL" type="integer" value="0"/>
<NameValueType name="gNumPopnBGOL" type="integer" value="1682"/>
<NameValueType name="rNumPopnBGOL" type="integer" value="348"/>
<NameValueType name="gOffsetUsed" type="float" value="29.575"/>
<NameValueType name="rOffsetUsed" type="float" value="40.2071"/>
<NameValueType name="gGlobalFeatInlierAve" type="float" value="323.846"/>
<NameValueType name="rGlobalFeatInlierAve" type="float" value="583.646"/>
<NameValueType name="gGlobalFeatInlierSDev" type="float" value="1033.18"/>
<NameValueType name="rGlobalFeatInlierSDev" type="float" value="1955.72"/>
<NameValueType name="gGlobalFeatInlierNum" type="integer" value="21367"/>
<NameValueType name="rGlobalFeatInlierNum" type="integer" value="21353"/>
<NameValueType name="AllColorPrcntSat" type="float" value="0.00466962"/>
<NameValueType name="AnyColorPrcntSat" type="float" value="0.0186785"/>
<NameValueType name="AnyColorPrcntFeatNonUnifOL" type="float" value="0.298856"/>
<NameValueType name="AnyColorPrcntBGNonUnifOL" type="float" value="0"/>
<NameValueType name="AnyColorPrcntFeatPopnOL" type="float" value="0.182115"/>
<NameValueType name="AnyColorPrcntBGPopnOL" type="float" value="8.9937"/>
<NameValueType name="TotalPrcntFeatOL" type="float" value="0.27047"/>
<NameValueType name="gNumNegBGSubFeat" type="integer" value="343"/>
<NameValueType name="rNumNegBGSubFeat" type="integer" value="279"/>
<NameValueType name="gNonCtrlNumNegFeatBGSubSig" type="integer" value="259"/>
<NameValueType name="rNonCtrlNumNegFeatBGSubSig" type="integer" value="132"/>
<NameValueType name="gLinearDyeNormFactor" type="float" value="16.7561"/>
<NameValueType name="rLinearDyeNormFactor" type="float" value="5.22579"/>
<NameValueType name="gRMSLowessDNF" type="float" value="22.0134"/>
<NameValueType name="rRMSLowessDNF" type="float" value="50.1577"/>
<NameValueType name="DyeNormDimensionlessRMS" type="float" value="0.216035"/>
<NameValueType name="DyeNormUnitWeightedRMS" type="float" value="0.171371"/>
<NameValueType name="gSpatialDetrendRMSFit" type="float" value="3.9975"/>
<NameValueType name="rSpatialDetrendRMSFit" type="float" value="3.71736"/>
<NameValueType name="gSpatialDetrendRMSFilteredMinusFit" type="float" value="2.12545"/>
<NameValueType name="rSpatialDetrendRMSFilteredMinusFit" type="float" value="2.38917"/>
<NameValueType name="gSpatialDetrendSurfaceArea" type="float" value="1.01325"/>
<NameValueType name="rSpatialDetrendSurfaceArea" type="float" value="1.02493"/>
<NameValueType name="gSpatialDetrendVolume" type="float" value="10.9527"/>
<NameValueType name="rSpatialDetrendVolume" type="float" value="11.292"/>
<NameValueType name="gSpatialDetrendAveFit" type="float" value="106.011"/>
<NameValueType name="rSpatialDetrendAveFit" type="float" value="83.0022"/>
<NameValueType name="gNonCtrlNumSatFeat" type="integer" value="2"/>
<NameValueType name="rNonCtrlNumSatFeat" type="integer" value="3"/>
<NameValueType name="gNonCtrl99PrcntNetSig" type="float" value="2481.41"/>
<NameValueType name="rNonCtrl99PrcntNetSig" type="float" value="7080.49"/>
<NameValueType name="gNonCtrl50PrcntNetSig" type="float" value="117.667"/>
<NameValueType name="rNonCtrl50PrcntNetSig" type="float" value="178.429"/>
<NameValueType name="gNonCtrl1PrcntNetSig" type="float" value="79.2974"/>
<NameValueType name="rNonCtrl1PrcntNetSig" type="float" value="59.0067"/>
<NameValueType name="gNonCtrlMedPrcntCVBGSubSig" type="float" value="22.0953"/>
<NameValueType name="rNonCtrlMedPrcntCVBGSubSig" type="float" value="15.7607"/>
<NameValueType name="gCtrlE1aNumSatFeat" type="integer" value="0"/>
<NameValueType name="rCtrlE1aNumSatFeat" type="integer" value="0"/>
<NameValueType name="gCtrlE1a99PrcntNetSig" type="float" value="121.482"/>
<NameValueType name="rCtrlE1a99PrcntNetSig" type="float" value="177.199"/>
<NameValueType name="gCtrlE1a50PrcntNetSig" type="float" value="94.4425"/>
<NameValueType name="rCtrlE1a50PrcntNetSig" type="float" value="76.9434"/>
<NameValueType name="gCtrlE1a1PrcntNetSig" type="float" value="76.3962"/>
<NameValueType name="rCtrlE1a1PrcntNetSig" type="float" value="52.5676"/>
<NameValueType name="gE1aMedPrcntCVBGSubSig" type="float" value="23.5282"/>
<NameValueType name="rE1aMedPrcntCVBGSubSig" type="float" value="15.686"/>
<NameValueType name="gE1aSig2BkgLow1" type="float" value="1.24927"/>
<NameValueType name="rE1aSig2BkgLow1" type="float" value="1.38354"/>
<NameValueType name="gE1aSig2BkgLow2" type="float" value="0.990279"/>
<NameValueType name="rE1aSig2BkgLow2" type="float" value="0.977402"/>
<NameValueType name="gNegCtrlNumInliers" type="integer" value="162"/>
<NameValueType name="rNegCtrlNumInliers" type="integer" value="162"/>
<NameValueType name="gNegCtrlAveNetSig" type="float" value="86.2382"/>
<NameValueType name="rNegCtrlAveNetSig" type="float" value="59.8486"/>
<NameValueType name="gNegCtrlSDevNetSig" type="float" value="6.07212"/>
<NameValueType name="rNegCtrlSDevNetSig" type="float" value="4.7044"/>
<NameValueType name="gNegCtrlAveBGSubSig" type="float" value="1.89186"/>
<NameValueType name="rNegCtrlAveBGSubSig" type="float" value="-0.90146"/>
<NameValueType name="gNegCtrlSDevBGSubSig" type="float" value="3.79268"/>
<NameValueType name="rNegCtrlSDevBGSubSig" type="float" value="2.35147"/>
<NameValueType name="gAveNumPixOLLo" type="float" value="0.354144"/>
<NameValueType name="rAveNumPixOLLo" type="float" value="0.368247"/>
<NameValueType name="gAveNumPixOLHi" type="float" value="0.663694"/>
<NameValueType name="rAveNumPixOLHi" type="float" value="0.619426"/>
<NameValueType name="gPixCVofHighSignalFeat" type="float" value="0.0877173"/>
<NameValueType name="rPixCVofHighSignalFeat" type="float" value="0.0741927"/>
<NameValueType name="gNumHighSignalFeat" type="integer" value="437"/>
<NameValueType name="rNumHighSignalFeat" type="integer" value="785"/>
<NameValueType name="NonCtrlAbsAveLogRatio" type="float" value="0.0831917"/>
<NameValueType name="NonCtrlSDevLogRatio" type="float" value="0.0901386"/>
<NameValueType name="NonCtrlSNRLogRatio" type="float" value="1.27804"/>
<NameValueType name="E1aAbsAveLogRatio" type="float" value="0.108874"/>
<NameValueType name="E1aSDevLogRatio" type="float" value="0.102891"/>
<NameValueType name="E1aSNRLogRatio" type="float" value="1.35153"/>
<NameValueType name="AddErrorEstimateGreen" type="float" value="270.034"/>
<NameValueType name="AddErrorEstimateRed" type="float" value="82.9691"/>
<NameValueType name="TotalNumFeatures" type="integer" value="21415"/>
<NameValueType name="NonCtrlNumUpReg" type="integer" value="172"/>
<NameValueType name="NonCtrlNumDownReg" type="integer" value="122"/>
<NameValueType name="E1aObsVsExpLRSlope" type="float" value="-0.0392932"/>
<NameValueType name="E1aObsVsExpLRIntercept" type="float" value="-0.108759"/>
<NameValueType name="E1aObsVsExpCorr" type="float" value="0.0320217"/>
<NameValueType name="NumIsNorm" type="integer" value="12140"/>
<NameValueType name="ROIHeight" type="float" value="9.40389"/>
<NameValueType name="ROIWidth" type="float" value="10.5805"/>
<NameValueType name="CentroidDiffX" type="float" value="2.38229"/>
<NameValueType name="CentroidDiffY" type="float" value="4.34753"/>
<NameValueType name="NumFoundFeat" type="integer" value="21402"/>
<NameValueType name="MaxNonUnifEdges" type="float" value="0.0139535"/>
<NameValueType name="MaxSpotNotFoundEdges" type="float" value="0.104762"/>
</SummaryStatistics_assnlist>
<BioAssayDimension_assnref>
<BioAssayDimension_ref identifier="Agilent.BRS:BioAssayDimension:1"/>
</BioAssayDimension_assnref>
<DesignElementDimension_assnref>
<FeatureDimension_ref identifier="Agilent.BRS:FeatureDimension:1"/>
</DesignElementDimension_assnref>
<QuantitationTypeDimension_assnref>
<QuantitationTypeDimension_ref identifier="Agilent.BRS:QuantitationTypeDimension:1"/>
</QuantitationTypeDimension_assnref>
<BioDataValues_assn>
<BioDataCube>
<DataInternal_assn>
<DataInternal>
37.5436 48.4832 -2.178102498e+000 3.291448531e-001 3.654260680e-011 0 0 1 1 4.931733e+004 3.272631e+002 6.413205e+002 9.827563e+000 0 0 3 0 57 57 2.883298e+003 1.592456e+002 2853 158 2.720014e+002 1.508344e+001 277 277 4.303971e+001 5.074007e+001 43 50 4.014721e+000 7.152907e+000 0 0 0 0 0.0196291 0.135993 0 0 0 0 0 0 0 0 0 2770.5 66.5295 36.0275 1.99785 0 1 1 1.76716e-058 2.19572e-040 1 1 1 1 112.798 92.7161 4.01472 7.15291 0 49317.3 327.263 641.32 9.82756 0 1 -6.617458778e+000 0 0 112.798 92.7161 0 0
59.37 48.3 0.000000000e+000 2.348492883e+000 1.000000000e+000 20.8467 105.883 1 1 2.084670e+001 1.058830e+002 1.529273e+001 2.384463e+001 0 2 0 1 57 57 1.130877e+002 8.749123e+001 118 89 2.102149e+001 1.129178e+001 284 284 4.272183e+001 5.037676e+001 43 50 3.795583e+000 6.641418e+000 0 0 0 0 0.594953 0.109445 0 0 0 0 0 0 0 0 0 0.375509 -5.13916 2.78436 1.49563 0 0 0 0.893543 0.00147731 1 1 0 0 112.712 92.6304 3.79558 6.64142 0 2.06243 -81.9327 15.2927 23.8446 0 1 3.005284302e-001 0 1 112.712 92.6304 0 0
80.125 49.5333 -6.006248304e-002 2.402389081e-001 8.025784769e-001 0 0 1 1 5.924784e+002 5.159529e+002 2.577997e+001 1.440219e+001 0 0 1 0 58 58 1.465517e+002 1.954310e+002 147.5 194 1.124242e+001 2.187533e+001 279 279 4.291756e+001 5.133692e+001 43 51 3.875353e+000 6.624114e+000 0 0 0 0 0.174717 0.0064106 0 0 0 0 0 0 0 1 0 33.9263 102.902 1.4762 2.87237 0 1 1 4.2224e-031 1.36142e-041 1 1 1 1 112.625 92.5294 3.87535 6.62411 1 592.478 515.953 25.78 14.4022 0 1 -2.500114720e-001 0 0 112.625 92.5294 0 0
101.046 48.5308 6.936471360e-002 1.172771721e-001 5.542124923e-001 0 0 1 1 1.572690e+003 1.845049e+003 3.684914e+001 2.569196e+001 0 0 0 0 60 60 1.997833e+002 4.722667e+002 201.5 466.5 1.583398e+001 4.096955e+001 279 279 4.339068e+001 4.996057e+001 43 50 3.966776e+000 5.672275e+000 0 0 0 0 0.0353626 -0.0111432 0 0 0 0 0 0 0 0 0 87.243 379.836 2.04416 5.28915 0 1 1 9.40123e-047 1.89089e-059 1 1 1 1 112.54 92.4306 3.96678 5.67227 1 1572.69 1845.05 36.8491 25.692 0 1 5.914596366e-001 0 0 112.54 92.4306 0 0
122.419 49.1624 -4.583507515e-001 4.853401288e-001 3.449699880e-001 0 0 1 1 4.204924e+002 1.463550e+002 2.115400e+001 9.555295e+000 0 1 1 0 56 56 1.385000e+002 1.193571e+002 137 119 9.792390e+000 1.320114e+001 279 279 4.267384e+001 5.022581e+001 43 50 3.790047e+000 6.113075e+000 0 0 0 0 0.104362 0.0555118 0 0 0 0 0 0 0 0 0 26.0112 27.0197 1.30856 1.76408 0 1 1 2.47381e-027 6.23725e-022 1 1 1 1 112.489 92.3374 3.79005 6.11308 0 420.492 146.355 21.154 9.5553 0 1 -9.443907979e-001 0 0 112.489 92.3374 0 0
143.484 47.7705 0.000000000e+000 2.031055494e+000 1.000000000e+000 0 91.9412 1 1 3.718562e+001 9.194122e+001 5.914339e+000 2.218375e+001 0 0 0 0 58 58 1.192069e+002 9.218966e+001 119 93 8.200896e+000 1.059702e+001 287 287 4.344599e+001 5.090941e+001 44 51 3.786668e+000 5.766931e+000 0 0 0 0 -0.0848428 -0.0216802 0 0 0 0 0 0 0 0 0 6.77043 -0.0534899 1.07683 1.39146 0 1 0 6.05291e-008 0.97033 1 1 0 0 112.436 92.2431 3.78667 5.76693 0 37.1856 -0.852781 5.91434 22.1838 0 1 1.935620368e-001 0 0 112.436 92.2431 0 0
164.779 48.5448 -2.558080160e+000 3.850474651e-001 3.062269355e-011 0 0 1 1 5.030831e+004 1.391745e+002 8.282936e+002 8.906273e+000 0 0 0 0 58 58 2.908828e+003 1.207414e+002 2897 121 3.506426e+002 1.393539e+001 286 286 4.378322e+001 5.002797e+001 44 49 3.756893e+000 6.195577e+000 0 0 0 0 0.21406 0.0239285 0 0 0 0 0 0 0 0 0 2796.44 28.5936 46.0416 1.82981 0 1 1 1.65742e-053 1.07965e-022 1 1 1 1 112.383 92.1478 3.75689 6.19558 0 50308.3 139.174 828.294 8.90627 0 1 -6.643544996e+000 0 0 112.383 92.1478 0 0
186.294 47.7059 -2.205240174e-001 6.810935266e-001 7.461050935e-001 0 0 1 1 2.320796e+002 1.396732e+002 1.630069e+001 8.616800e+000 3 1 0 0 58 58 1.273621e+002 1.166724e+002 127 116.5 8.043082e+000 1.156733e+001 285 285 4.403158e+001 5.121754e+001 44 51 3.866940e+000 6.293444e+000 0 0 0 0 0.0597535 -0.0368888 0 0 0 0 0 0 0 1 0 15.0362 24.6199 1.05611 1.51886 0 1 1 8.41634e-021 1.0803e-023 1 1 1 1 112.326 92.0525 3.86694 6.29344 0 232.08 139.673 16.3007 8.6168 0 1 -3.237793472e-001 0 0 112.326 92.0525 0 0
206.802 48.5537 -3.249498772e-001 4.970479651e-001 5.132667012e-001 0 0 1 1 3.582571e+002 1.695294e+002 2.169379e+001 8.105652e+000 0 0 0 0 58 58 1.344310e+002 1.232241e+002 135.5 125.5 1.022915e+001 1.138642e+001 287 287 4.323345e+001 5.149477e+001 43 51 4.006707e+000 6.438450e+000 0 0 0 0 -0.110047 0.00648558 0 0 0 0 0 0 0 1 0 22.1812 31.2702 1.34315 1.49511 0 1 1 8.92016e-024 1.08926e-029 1 1 1 1 112.25 91.954 4.00671 6.43845 0 358.257 169.529 21.6938 8.10565 0 1 -6.537595966e-001 0 0 112.25 91.954 0 0
228.578 48.8073 -3.512211602e-001 1.071523870e+000 7.430800812e-001 0 0 1 1 1.677583e+002 7.472448e+001 2.024619e+001 9.028987e+000 4 4 0 1 53 53 1.239434e+002 1.040189e+002 124 103 1.034113e+001 1.069955e+001 276 276 4.234058e+001 5.154348e+001 42 51 3.830018e+000 6.831073e+000 0 0 0 0 0.00904771 0.00123881 0 0 0 0 0 0 0 1 0 11.7699 12.1633 1.42046 1.4697 0 1 1 4.59613e-011 5.28654e-011 1 1 1 0 112.174 91.8556 3.83002 6.83107 0 167.758 74.7245 20.2462 9.02899 0 1 -3.277772618e-001 0 0 112.174 91.8556 0 0
249.423 48.7027 -2.598440857e-001 3.025362900e-001 3.904035945e-001 0 0 1 1 5.701080e+002 3.134101e+002 2.268192e+001 1.523931e+001 0 0 0 0 59 59 1.453729e+002 1.531186e+002 145 151 1.016230e+001 2.291821e+001 283 283 4.255124e+001 5.070318e+001 42 50 3.902176e+000 6.333259e+000 0 0 0 0 0.206939 -0.0698353 0 0 0 0 0 0 0 0 0 33.254 61.3624 1.32302 2.9837 0 1 1 1.02022e-033 1.21323e-028 1 1 1 1 112.119 91.7562 3.90218 6.33326 0 570.108 313.41 22.6819 15.2393 0 1 -8.588856753e-001 0 0 112.119 91.7562 0 0
270.436 47.5639 -1.756009902e-001 2.120914320e-001 4.076991137e-001 0 0 1 1 7.870324e+002 5.252809e+002 3.359295e+001 1.463490e+001 0 1 0 0 57 57 1.568070e+002 1.971754e+002 155 198 1.441903e+001 2.219485e+001 283 283 4.252297e+001 5.034276e+001 42 50 3.752352e+000 5.913608e+000 0 0 0 0 0.174199 -0.119332 0 0 0 0 0 0 0 0 0 44.7449 105.516 1.90985 2.93978 0 1 1 5.87819e-031 6.01193e-041 1 1 1 1 112.062 91.6599 3.75235 5.91361 0 787.032 525.281 33.5929 14.6349 0 1 -8.279494770e-001 0 0 112.062 91.6599 0 0
291.921 48.6063 -4.489758727e-001 5.703047152e-001 4.311319560e-001 0 0 1 1 3.518660e+002 1.251415e+002 2.047875e+001 7.422314e+000 1 1 0 0 58 58 1.342586e+002 1.141207e+002 133.5 113 9.877425e+000 1.019301e+001 288 288 4.229514e+001 5.021181e+001 42 51 3.762974e+000 6.439231e+000 0 0 0 0 0.0268679 -0.123092 0 0 0 0 0 0 0 0 0 22.2845 22.5658 1.29697 1.33841 0 1 1 1.30633e-024 8.52834e-025 1 1 1 1 111.974 91.5549 3.76297 6.43923 0 351.866 125.142 20.4787 7.42231 0 1 -7.872561119e-001 0 0 111.974 91.5549 0 0
312.958 48.7431 -2.461109352e+000 3.707023138e-001 3.157219528e-011 0 0 1 1 5.099920e+004 1.763819e+002 7.993475e+002 9.962527e+000 1 4 4 0 53 53 2.953566e+003 1.276038e+002 2908 125 3.242540e+002 1.486521e+001 276 276 4.328261e+001 5.030797e+001 43 49 3.810968e+000 6.348893e+000 0 0 0 0 -0.0305216 -0.03442 0 0 0 0 0 0 0 0 0 2841.68 36.1508 44.5397 2.04189 0 1 1 4.61818e-051 3.48214e-024 1 1 1 1 111.886 91.453 3.81097 6.34889 0 50999.2 176.382 799.347 9.96253 0 1 -6.639045025e+000 0 0 111.886 91.453 0 0
333.364 49.155 -4.566351551e-001 5.049951329e-001 3.658698829e-001 0 0 1 1 4.025835e+002 1.406763e+002 2.261616e+001 8.238468e+000 0 2 0 0 58 58 1.368448e+002 1.171724e+002 138 116 1.071612e+001 1.151679e+001 284 284 4.270775e+001 5.086268e+001 42.5 50.5 3.469576e+000 6.143066e+000 0 0 0 0 0.117639 0.0972513 0 0 0 0 0 0 0 0 0 25.0473 25.8221 1.4071 1.51223 0 1 1 2.85486e-025 7.8026e-025 1 1 1 1 111.798 91.3503 3.46958 6.14307 0 402.584 140.676 22.6162 8.23847 0 1 -9.042367448e-001 0 0 111.798 91.3503 0 0
354.811 47.5118 -1.534322519e-002 1.114972167e-001 8.905479912e-001 0 0 1 1 1.989342e+003 1.920287e+003 3.934931e+001 3.155639e+001 0 0 0 0 58 58 2.219828e+002 4.868621e+002 221 480.5 1.661165e+001 4.951252e+001 291 291 4.326117e+001 5.059794e+001 43 50 4.003512e+000 6.312538e+000 0 0 0 0 -0.0248314 0.0101729 0 0 0 0 0 0 0 0 0 110.274 395.622 2.18122 6.50131 0 1 1 1.00548e-049 9.03692e-054 1 1 1 1 111.709 91.2405 4.00351 6.31254 1 1989.34 1920.29 39.3493 31.5564 0 1 -1.376108359e-001 0 0 111.709 91.2405 0 0
376.151 50 -3.164514782e-001 1.156655762e+000 7.843983720e-001 0 0 1 1 1.499470e+002 7.235798e+001 1.718210e+001 7.775935e+000 1 1 1 0 60 60 1.222833e+002 1.027500e+002 121 103 9.463743e+000 9.673702e+000 262 262 4.350000e+001 4.961450e+001 44 49 3.870262e+000 6.328209e+000 0 0 0 0 -0.0614191 0.0221358 0 0 0 0 0 0 0 0 0 10.6623 11.6212 1.22176 1.24887 0 1 1 3.44002e-012 3.91581e-013 1 1 1 0 111.621 91.1288 3.87026 6.32821 0 149.947 72.358 17.1821 7.77594 0 1 -2.735917536e-001 0 0 111.621 91.1288 0 0
397.347 49.0726 -6.408774541e-002 1.174810369e-001 5.853989148e-001 0 0 1 1 1.823434e+003 1.573266e+003 3.558581e+001 2.060060e+001 0 0 2 0 58 58 2.126897e+002 4.148966e+002 213.5 411 1.503470e+001 3.229724e+001 281 281 4.303559e+001 5.111388e+001 43 51 4.046888e+000 6.494601e+000 0 0 0 0 0.148498 0.128256 0 0 0 0 0 0 0 1 0 101.157 323.872 1.97415 4.24084 0 1 1 2.94931e-050 9.23086e-060 1 1 1 1 111.533 91.0243 4.04689 6.4946 1 1823.43 1573.27 35.5858 20.6006 0 1 -5.455156603e-001 0 0 111.533 91.0243 0 0
418.333 49.4952 -2.163326616e-001 3.745405925e-001 5.635377853e-001 0 0 1 1 4.305114e+002 2.616086e+002 2.258903e+001 1.050278e+001 1 0 0 0 57 57 1.371228e+002 1.410175e+002 136 141 1.017186e+001 1.518280e+001 274 274 4.286861e+001 5.077007e+001 43 50.5 3.828403e+000 6.382357e+000 0 0 0 0 -0.0279959 0.0399851 0 0 0 0 0 0 0 0 0 25.6773 50.0913 1.3473 2.01101 0 1 1 1.18135e-026 5.79239e-033 1 1 1 1 111.445 90.9263 3.8284 6.38236 0 430.511 261.609 22.589 10.5028 0 1 -5.775947012e-001 0 0 111.445 90.9263 0 0
439.958 48.8944 -3.660858967e-001 1.647609432e+000 8.241642979e-001 0 47.5329 1 1 1.104283e+002 4.753293e+001 1.888940e+001 1.153190e+001 0 1 0 0 61 61 1.205738e+002 9.342623e+001 118 92 1.231186e+001 1.232539e+001 275 275 4.272000e+001 5.038909e+001 43 50 4.033365e+000 6.504734e+000 0 0 0 0 0.0816133 0.0567505 0 0 0 0 0 0 0 0 0 9.21555 2.59986 1.57637 1.5781 0 1 0 2.53818e-007 0.114527 1 1 0 0 111.358 90.8264 4.03336 6.50473 0 110.428 18.9983 18.8894 11.5319 0 1 -2.221921588e-001 1 1 111.358 90.8264 0 0
461 48.8723 -2.517330382e+000 3.789642574e-001 3.080737754e-011 0 0 1 1 5.626708e+004 1.709716e+002 9.167015e+002 9.721501e+000 0 0 2 0 61 61 3.248705e+003 1.257377e+002 3160 124 3.992193e+002 1.555089e+001 268 268 4.335075e+001 5.074627e+001 43 50 4.335650e+000 6.460119e+000 0 0 0 0 -0.0258333 0.0875662 0 0 0 0 0 0 0 0 0 3137.42 35.0172 51.1148 1.99109 0 1 1 7.40596e-056 6.54627e-026 1 1 1 1 111.282 90.7205 4.33565 6.46012 0 56267.1 170.972 916.702 9.7215 0 1 -6.642659123e+000 0 0 111.282 90.7205 0 0
481.922 48.2171 -3.045573937e-002 1.100513078e-001 7.819787754e-001 0 0 1 1 2.115412e+003 1.972147e+003 3.118019e+001 3.185200e+001 1 0 5 1 57 57 2.284737e+002 4.969474e+002 227 496 1.304813e+001 4.954703e+001 285 285 4.308421e+001 5.061754e+001 43 50 3.969061e+000 6.460964e+000 0 0 0 0 0.490927 0.159577 0 0 0 0 0 0 0 0 0 117.254 406.333 1.72827 6.56266 0 1 1 8.66933e-057 1.70268e-053 1 1 1 1 111.22 90.6139 3.96906 6.46096 1 2115.41 1972.15 31.1802 31.852 0 1 -2.767412762e-001 0 0 111.22 90.6139 0 0
503.262 49.6168 -1.765204356e-001 4.008394621e-001 6.596641602e-001 0 0 1 1 3.834575e+002 2.553858e+002 2.717963e+001 1.186308e+001 0 0 0 0 59 59 1.342034e+002 1.390339e+002 133 139 1.254754e+001 1.731450e+001 276 276 4.280072e+001 4.973551e+001 42 49.5 4.047015e+000 7.029210e+000 0 0 0 0 -0.159705 0.049783 0 0 0 0 0 0 0 0 0 23.0466 48.527 1.63355 2.25416 0 1 1 1.38016e-020 4.27431e-030 1 1 1 1 111.157 90.5069 4.04701 7.02921 0 383.457 255.386 27.1796 11.8631 0 1 -4.403768898e-001 0 0 111.157 90.5069 0 0
524.455 48.8601 -2.887612452e-001 3.968675095e-001 4.668577963e-001 0 0 1 1 4.374060e+002 2.249694e+002 3.408013e+001 9.261406e+000 0 2 0 0 56 56 1.373750e+002 1.331607e+002 135 134 1.532385e+001 1.317267e+001 259 259 4.294208e+001 5.034749e+001 43 51 3.920791e+000 6.571233e+000 0 0 0 0 0.0923813 0.0758531 0 0 0 0 0 0 0 0 0 26.2819 42.7589 2.04774 1.76027 0 1 1 2.87855e-018 1.91191e-032 1 1 1 1 111.093 90.4018 3.92079 6.57123 0 437.406 224.969 34.0801 9.26141 0 1 -7.276011219e-001 0 0 111.093 90.4018 0 0
545.298 49.6116 -1.199125758e-002 1.224889529e-001 9.220143638e-001 0 0 1 1 1.541246e+003 1.499273e+003 3.788212e+001 2.070463e+001 0 1 0 0 58 58 1.966034e+002 3.986724e+002 197.5 402 1.601856e+001 3.243260e+001 260 260 4.232308e+001 4.991154e+001 42 50 3.700601e+000 5.902347e+000 0 0 0 0 0.161871 0.0928793 0 0 0 0 0 0 0 0 0 85.5751 308.376 2.10334 4.25861 0 1 1 2.17145e-044 2.30876e-058 1 1 1 1 111.028 90.2962 3.7006 5.90235 1 1541.25 1499.27 37.8821 20.7046 0 1 -9.789664536e-002 0 0 111.028 90.2962 0 0
566.672 47.96 -1.227322929e-001 1.215672755e-001 3.126949682e-001 0 0 1 1 1.816909e+003 1.369623e+003 4.352687e+001 2.312236e+001 0 1 1 0 59 59 2.118136e+002 3.719831e+002 215 372 1.855790e+001 3.654166e+001 280 280 4.201786e+001 5.055000e+001 42 51 3.886799e+000 6.911447e+000 0 0 0 0 0.130703 0.099301 0 0 0 0 0 0 0 0 0 100.851 281.794 2.41603 4.75732 0 1 1 1.97069e-045 4.37835e-054 1 1 1 1 110.963 90.1895 3.8868 6.91145 0 1816.91 1369.62 43.5269 23.1224 0 1 -1.009583314e+000 0 0 110.963 90.1895 0 0
587.958 48.8944 6.410341402e-003 1.432527272e-001 9.643077931e-001 0 0 1 1 1.110183e+003 1.126691e+003 4.121276e+001 1.479748e+001 0 2 0 2 58 58 1.728793e+002 3.205517e+002 171.5 319.5 1.752300e+001 2.305232e+001 257 257 4.287549e+001 5.091440e+001 43 51 3.881052e+000 5.960848e+000 0 0 0 0 0.174153 -0.073406 0 0 0 0 0 0 0 0 0 61.9808 230.472 2.30088 3.02692 0 1 1 1.88465e-034 3.26113e-060 1 1 1 1 110.899 90.08 3.88105 5.96085 1 1110.18 1126.69 41.2128 14.7975 0 1 4.474847722e-002 0 0 110.899 90.08 0 0
609.409 48.9347 -2.495249263e+000 3.757050368e-001 3.104828562e-011 0 0 1 1 5.560863e+004 1.777841e+002 8.358790e+002 6.987194e+000 1 0 0 0 59 59 3.212492e+003 1.263729e+002 3141 125 3.581138e+002 1.098886e+001 239 239 4.345607e+001 5.124268e+001 43 51 4.733791e+000 6.954209e+000 0 0 0 0 -0.0712164 0.180544 0 0 0 0 0 0 0 1 0 3101.66 36.4013 46.6224 1.43063 0 1 1 1.81743e-056 8.99419e-036 1 1 1 1 110.834 89.9716 4.73379 6.95421 0 55608.6 177.784 835.879 6.98719 0 1 -6.641511341e+000 0 0 110.834 89.9716 0 0
630.336 49.1034 -3.138332365e-001 9.002709712e-001 7.273906493e-001 0 0 1 1 1.926261e+002 9.351516e+001 1.950261e+001 8.873485e+000 1 2 0 0 57 57 1.238596e+002 1.055789e+002 125 108 1.000614e+001 1.125825e+001 290 290 4.166552e+001 4.998276e+001 41 50 3.648271e+000 5.884386e+000 0 0 0 0 0.0213413 -0.00961806 0 0 0 0 0 0 0 0 0 13.0904 15.7152 1.32535 1.49119 0 1 1 6.62155e-014 5.2057e-015 1 1 1 1 110.769 89.8637 3.64827 5.88439 0 192.626 93.5152 19.5026 8.87349 0 1 -3.485986403e-001 0 0 110.769 89.8637 0 0
651.52 48.9756 -4.871762968e-002 1.002247066e+000 9.612313729e-001 0 0 1 1 1.299571e+002 1.161669e+002 1.387584e+001 9.427698e+000 0 0 1 0 59 59 1.196610e+002 1.089831e+002 120 107 7.354591e+000 1.198489e+001 287 287 4.219164e+001 5.041115e+001 42 50 3.814061e+000 6.122149e+000 0 0 0 0 0.299991 -0.0484584 0 0 0 0 0 0 0 0 0 8.96753 19.2258 0.957486 1.5603 0 1 1 3.27748e-013 4.45986e-018 1 1 0 1 110.693 89.7572 3.81406 6.12215 1 129.957 116.167 13.8758 9.4277 0 1 -4.860840340e-002 0 0 110.693 89.7572 0 0
</DataInternal>
</DataInternal_assn>
</BioDataCube>
</BioDataValues_assn>
</MeasuredBioAssayData>
</BioAssayData_assnlist>
</BioAssayData_package>
</MAGE-ML>