Protocol: X!Tandem Analysis with Xpress Quantitation

demo
Name X!Tandem Analysis with Xpress Quantitation
Contact
Instrument
Software
Description Use X!Tandem to search for peptides in one mzXml file, then run Xpress to do quantitation
Max input data per instance
Max input material per instance
Output data per instance
Output material per instance
Category xtandem
ApplicationLSIDTemplate ${RunLSIDBase}:MS2.XTandemXpressAnalysis
ApplicationNameTemplate XTandem with Xpress analysis run
Material Inputs
Data Inputs
Material Outputs
Data Outputs
Protocol Steps
Step Name Description
1 X!Tandem Analysis with Xpress Quantitation Use X!Tandem to search for peptides in one mzXml file, then run Xpress to do quantitation
50 XTandem analysis
60 Convert To PepXml
70 Run Peptide Prophet using XInteract
75 Xpress quantitation
80 Run Protein Prophet using XInteract
1000 Mark Run Outputs