Protocol Step: Marelli_protocol (LCMS2): /home/Demos/CPAS/demo

Protocol Step: Marelli_protocol (LCMS2)

demo

Standard Properties

Name	Marelli_protocol (LCMS2)
Contact
Instrument
Software
Description	Prepare and run LCMS, producing one mzXml file per input sample.
Max input data per instance
Max input material per instance
Output data per instance
Output material per instance

Custom Properties

Category	mass_spec
TreatAsFractions	false

Protocol Parameters

ApplicationLSIDTemplate	${RunLSIDBase}:MS2.PreSearch
ApplicationNameTemplate	Do MS2 Run

Protocol Details

Material Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Material Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Protocol Predecessors

Name	Predecessor Sequence Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Description
Marelli_protocol (LCMS2)	1	Prepare and run LCMS, producing one mzXml file per input sample.

Protocol Successors

Name	Action Sequence Sort Ascending Sort Descending Clear Sort Filter... Clear Filter	Description
Marelli_protocol (LCMS2)	1	Prepare and run LCMS, producing one mzXml file per input sample.
Marelli_protocol Sample Prep	10	An organellar 20KgP fraction was subjected to isopycnic density gradient centrifugation and analyzed by SDS-PAGE and Coomassie blue staining. Fractions enriched for peroxisomes (EP) or mitochondria (M) were identified by Western blotting. Equal amounts of protein derived from each of the hypotonically lysed M and EP fractions were combined and analyzed by ICAT MS/MS.