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Protocol: X!Tandem Analysis with Xpress Quantitation

demoset

Standard Properties

 
Name X!Tandem Analysis with Xpress Quantitation
Contact
Instrument
Software
Description Use X!Tandem to search for peptides in one mzXml file, then run Xpress to do quantitation
Max input data per instance
Max input material per instance
Output data per instance
Output material per instance

Custom Properties

 
Category xtandem

Protocol Parameters

 
ApplicationLSIDTemplate ${RunLSIDBase}:MS2.XTandemXpressAnalysis
ApplicationNameTemplate XTandem with Xpress analysis run

Protocol Details

 
Material Inputs
No data to show.
Data Inputs
No data to show.
Material Outputs
No data to show.
Data Outputs
No data to show.
Protocol Steps
Step Name Description
1 X!Tandem Analysis with Xpress Quantitation Use X!Tandem to search for peptides in one mzXml file, then run Xpress to do quantitation
50 XTandem analysis
60 Convert To PepXml
70 Run Peptide Prophet using XInteract
75 Xpress quantitation
80 Run Protein Prophet using XInteract
1000 Mark Run Outputs

Runs Using This Protocol

 
 
VARMIX_D/VARMIX_D_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationDemoSet, AlphaRunGroup
VARMIX_A/VARMIX_A_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_B/VARMIX_B_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup, DemoSet
VARMIX_B/VARMIX_B_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_C/VARMIX_C_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_E/VARMIX_E_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_C/VARMIX_C_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_E/VARMIX_E_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_D/VARMIX_D_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_B/VARMIX_B_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_E/VARMIX_E_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_C/VARMIX_C_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_C/VARMIX_C_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_C/VARMIX_C_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_B/VARMIX_B_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_E/VARMIX_E_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_A/VARMIX_A_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_D/VARMIX_D_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_A/VARMIX_A_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_E/VARMIX_E_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_A/VARMIX_A_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_D/VARMIX_D_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_B/VARMIX_B_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_D/VARMIX_D_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_A/VARMIX_A_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationAlphaRunGroup
VARMIX_N/VARMIX_N_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup, DemoSet
VARMIX_O/VARMIX_O_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_K/VARMIX_K_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup, DemoSet
VARMIX_N/VARMIX_N_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_M/VARMIX_M_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_M/VARMIX_M_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_L/VARMIX_L_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_N/VARMIX_N_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_K/VARMIX_K_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_O/VARMIX_O_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_N/VARMIX_N_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_K/VARMIX_K_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_L/VARMIX_L_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_K/VARMIX_K_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_L/VARMIX_L_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_N/VARMIX_N_01 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_O/VARMIX_O_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_L/VARMIX_L_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_O/VARMIX_O_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_K/VARMIX_K_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_O/VARMIX_O_05 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_M/VARMIX_M_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_M/VARMIX_M_04 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_L/VARMIX_L_02 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup
VARMIX_M/VARMIX_M_03 (kscorev5)2008-05-12 08:51PeterX!Tandem Analysis with Xpress QuantitationBetaRunGroup