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  1. Protocols

Protocol: X!Tandem Analysis

ms1ms2matching

Standard Properties

 
Name X!Tandem Analysis
Contact
Instrument
Software
Description Use X!Tandem to search for peptides in one mzXml file
Max input data per instance
Max input material per instance
Output data per instance
Output material per instance

Custom Properties

 
Category xtandem

Protocol Parameters

 
ApplicationLSIDTemplate ${RunLSIDBase}:MS2.XTandemAnalysis
ApplicationNameTemplate XTandem analysis run

Protocol Details

 
Material Inputs
No data to show.
Data Inputs
No data to show.
Material Outputs
No data to show.
Data Outputs
No data to show.
Protocol Steps
Step Name Description
1 X!Tandem Analysis Use X!Tandem to search for peptides in one mzXml file
50 XTandem analysis
60 Convert To PepXml
70 Run Peptide Prophet using XInteract
80 Run Protein Prophet using XInteract
1000 Mark Run Outputs

Runs Using This Protocol

 
 
VARMIX_O/VARMIX_O_05 (Kscorev5copy)2008-07-14 10:48PeterX!Tandem Analysis
VARMIX_O/VARMIX_O_04 (Kscorev5copy)2008-07-14 10:19PeterX!Tandem Analysis
VARMIX_O/VARMIX_O_03 (Kscorev5copy)2008-07-14 09:52PeterX!Tandem Analysis
VARMIX_O/VARMIX_O_02 (Kscorev5copy)2008-07-14 09:25PeterX!Tandem Analysis
VARMIX_O/VARMIX_O_01 (Kscorev5copy)2008-07-14 08:58PeterX!Tandem Analysis
VARMIX_N/VARMIX_N_05 (Kscorev5copy)2008-07-14 08:28PeterX!Tandem Analysis
VARMIX_N/VARMIX_N_04 (Kscorev5copy)2008-07-14 08:01PeterX!Tandem Analysis
VARMIX_N/VARMIX_N_03 (Kscorev5copy)2008-07-14 07:33PeterX!Tandem Analysis
VARMIX_N/VARMIX_N_02 (Kscorev5copy)2008-07-14 07:06PeterX!Tandem Analysis
VARMIX_N/VARMIX_N_01 (Kscorev5copy)2008-07-14 06:40PeterX!Tandem Analysis
VARMIX_M/VARMIX_M_05 (Kscorev5copy)2008-07-14 06:11PeterX!Tandem Analysis
VARMIX_M/VARMIX_M_04 (Kscorev5copy)2008-07-14 05:45PeterX!Tandem Analysis
VARMIX_M/VARMIX_M_03 (Kscorev5copy)2008-07-14 05:18PeterX!Tandem Analysis
VARMIX_M/VARMIX_M_02 (Kscorev5copy)2008-07-14 04:49PeterX!Tandem Analysis
VARMIX_M/VARMIX_M_01 (Kscorev5copy)2008-07-14 04:22PeterX!Tandem Analysis
VARMIX_L/VARMIX_L_05 (Kscorev5copy)2008-07-14 03:51PeterX!Tandem Analysis
VARMIX_L/VARMIX_L_04 (Kscorev5copy)2008-07-14 03:25PeterX!Tandem Analysis
VARMIX_L/VARMIX_L_03 (Kscorev5copy)2008-07-14 02:53PeterX!Tandem Analysis
VARMIX_L/VARMIX_L_02 (Kscorev5copy)2008-07-14 02:26PeterX!Tandem Analysis
VARMIX_L/VARMIX_L_01 (Kscorev5copy)2008-07-14 01:58PeterX!Tandem Analysis
VARMIX_K/VARMIX_K_05 (Kscorev5copy)2008-07-14 01:29PeterX!Tandem Analysis
VARMIX_K/VARMIX_K_04 (Kscorev5copy)2008-07-14 00:59PeterX!Tandem Analysis
VARMIX_K/VARMIX_K_03 (Kscorev5copy)2008-07-14 00:33PeterX!Tandem Analysis
VARMIX_K/VARMIX_K_02 (Kscorev5copy)2008-07-14 00:06PeterX!Tandem Analysis
VARMIX_K/VARMIX_K_01 (Kscorev5copy)2008-07-13 23:40PeterX!Tandem Analysis
VARMIX_E/VARMIX_E_05 (Kscorev5copy)2008-07-13 23:12PeterX!Tandem Analysis
VARMIX_E/VARMIX_E_04 (Kscorev5copy)2008-07-13 22:45PeterX!Tandem Analysis
VARMIX_E/VARMIX_E_03 (Kscorev5copy)2008-07-13 22:17PeterX!Tandem Analysis
VARMIX_E/VARMIX_E_02 (Kscorev5copy)2008-07-13 21:50PeterX!Tandem Analysis
VARMIX_E/VARMIX_E_01 (Kscorev5copy)2008-07-13 21:21PeterX!Tandem Analysis
VARMIX_D/VARMIX_D_05 (Kscorev5copy)2008-07-13 20:54PeterX!Tandem Analysis
VARMIX_D/VARMIX_D_04 (Kscorev5copy)2008-07-13 20:27PeterX!Tandem Analysis
VARMIX_D/VARMIX_D_03 (Kscorev5copy)2008-07-13 20:01PeterX!Tandem Analysis
VARMIX_D/VARMIX_D_02 (Kscorev5copy)2008-07-13 19:29PeterX!Tandem Analysis
VARMIX_D/VARMIX_D_01 (Kscorev5copy)2008-07-13 19:02PeterX!Tandem Analysis
VARMIX_B/VARMIX_B_05 (Kscorev5copy)2008-07-13 18:35PeterX!Tandem Analysis
VARMIX_B/VARMIX_B_04 (Kscorev5copy)2008-07-13 18:08PeterX!Tandem Analysis
VARMIX_B/VARMIX_B_03 (Kscorev5copy)2008-07-13 17:41PeterX!Tandem Analysis
VARMIX_B/VARMIX_B_02 (Kscorev5copy)2008-07-13 17:15PeterX!Tandem Analysis
VARMIX_B/VARMIX_B_01 (Kscorev5copy)2008-07-13 16:49PeterX!Tandem Analysis
VARMIX_C/VARMIX_C_05 (Kscorev5copy)2008-06-16 21:30PeterX!Tandem Analysis
VARMIX_C/VARMIX_C_04 (Kscorev5copy)2008-06-16 21:03PeterX!Tandem Analysis
VARMIX_C/VARMIX_C_03 (Kscorev5copy)2008-06-16 20:37PeterX!Tandem Analysis
VARMIX_C/VARMIX_C_02 (Kscorev5copy)2008-06-16 20:09PeterX!Tandem Analysis
VARMIX_C/VARMIX_C_01 (Kscorev5copy)2008-06-16 19:40PeterX!Tandem Analysis
Run242/VARMIX_D_04 (Kscorev5copy)2008-06-05 10:14PeterX!Tandem Analysis