| | | | | | | | | | | | | | 8-Pol1 |
| L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 164,502 | 161,238 | 98.016 | 142,219 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 301,158 | 289,451 | 96.113 | 271,914 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 264,030 | 255,963 | 96.945 | 241,421 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 308,308 | 296,860 | 96.287 | 272,738 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 283,868 | 267,492 | 94.231 | 219,867 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 259,012 | 250,383 | 96.668 | 236,585 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 250,250 | 240,231 | 95.996 | 211,600 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 245,700 | 238,475 | 97.059 | 223,850 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Pol2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 170,222 | 166,131 | 97.597 | 143,851 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 311,376 | 301,312 | 96.768 | 284,014 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 278,850 | 271,363 | 97.315 | 257,505 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 316,420 | 305,550 | 96.565 | 281,506 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 305,266 | 290,214 | 95.069 | 233,827 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 270,842 | 262,906 | 97.07 | 248,782 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 231,530 | 223,948 | 96.725 | 202,046 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 213,694 | 206,902 | 96.822 | 195,722 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Pol3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 159,276 | 154,306 | 96.88 | 136,624 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 317,304 | 307,605 | 96.943 | 289,666 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 310,076 | 301,328 | 97.179 | 287,414 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 329,576 | 318,213 | 96.552 | 296,564 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 303,056 | 287,259 | 94.787 | 236,727 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 260,234 | 252,648 | 97.085 | 239,571 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 229,086 | 219,336 | 95.744 | 198,209 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 251,342 | 242,661 | 96.546 | 229,178 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Nef | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 169,988 | 164,974 | 97.05 | 149,433 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 310,778 | 298,560 | 96.069 | 286,698 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 256,334 | 248,530 | 96.956 | 237,442 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 290,446 | 279,812 | 96.339 | 257,236 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 288,444 | 272,358 | 94.423 | 223,050 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 270,114 | 261,314 | 96.742 | 246,010 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 256,646 | 246,096 | 95.889 | 223,901 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 257,920 | 249,123 | 96.589 | 236,591 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 159,744 | 155,674 | 97.452 | 141,521 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 9-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 225,680 | 219,223 | 97.139 | 199,536 | 226,720 | 220,040.5 | 97.054 | 201,046 |
| 9-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 227,760 | 220,858 | 96.97 | 202,556 | 226,720 | 220,040.5 | 97.054 | 201,046 |
| 9-CMV | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 232,856 | 226,817 | 97.407 | 205,792 | 226,720 | 220,040.5 | 97.054 | 201,046 |
| 9-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 245,336 | 238,347 | 97.151 | 214,267 | 226,720 | 220,040.5 | 97.054 | 201,046 |
| 1-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 278,954 | 271,177 | 97.212 | 247,919 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 250,120 | 243,924 | 97.523 | 229,084 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 286,338 | 277,719 | 96.99 | 248,564 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 244,400 | 232,452 | 95.111 | 182,912 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 263,484 | 256,649 | 97.406 | 240,013 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 216,944 | 210,309 | 96.942 | 186,768 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 227,734 | 221,807 | 97.397 | 208,880 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-SEB | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 175,630 | 171,548 | 97.676 | 148,979 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 259,324 | 253,906 | 97.911 | 238,928 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 1-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 252,304 | 247,591 | 98.132 | 233,566 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 268,476 | 262,252 | 97.682 | 251,216 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 2-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 235,924 | 231,686 | 98.204 | 221,897 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 268,216 | 261,625 | 97.543 | 241,095 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 3-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 280,046 | 274,129 | 97.887 | 253,756 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 242,814 | 232,550 | 95.773 | 189,650 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 4-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 253,994 | 244,815 | 96.386 | 199,113 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 234,182 | 229,308 | 97.919 | 218,033 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 5-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 252,044 | 246,776 | 97.91 | 232,382 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 224,874 | 218,268 | 97.062 | 195,466 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 6-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 221,598 | 216,012 | 97.479 | 192,061 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 229,729 | 224,631 | 97.781 | 211,663 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 7-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 245,804 | 240,592 | 97.88 | 226,561 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 172,198 | 168,091 | 97.615 | 146,827 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 8-Neg Cont | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 176,878 | 173,620 | 98.158 | 151,952 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 48,903 | 45,939 | 93.939 | 32,494 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 112,736 | 104,371 | 92.58 | 77,156 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 97,396 | 89,414 | 91.805 | 64,061 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 143,979 | 133,008 | 92.38 | 76,481 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 79,222 | 71,953 | 90.825 | 47,235 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 117,234 | 108,908 | 92.898 | 72,794 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 53,898 | 48,859 | 90.651 | 30,693 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Env1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 19,520 | 18,543 | 94.995 | 8,094 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 142,402 | 132,533 | 93.07 | 97,928 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 162,186 | 151,852 | 93.628 | 110,085 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 165,464 | 155,419 | 93.929 | 115,574 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 198,562 | 185,759 | 93.552 | 105,886 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 147,992 | 137,709 | 93.052 | 101,323 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 164,008 | 153,633 | 93.674 | 98,264 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 73,194 | 67,265 | 91.9 | 37,916 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Env2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 59,425 | 55,033 | 92.609 | 23,752 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 56,648 | 52,731 | 93.085 | 22,468 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 162,523 | 151,006 | 92.914 | 93,265 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 182,416 | 169,660 | 93.007 | 102,680 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 186,407 | 173,592 | 93.125 | 94,236 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 130,849 | 121,492 | 92.849 | 72,609 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 174,133 | 162,945 | 93.575 | 106,163 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 54,406 | 49,558 | 91.089 | 19,816 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Env3 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 51,336 | 48,106 | 93.708 | 19,953 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 283,597 | 274,957 | 96.953 | 259,526 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 287,898 | 279,129 | 96.954 | 265,011 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 287,325 | 277,864 | 96.707 | 258,177 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 255,965 | 242,534 | 94.753 | 196,062 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 233,985 | 225,788 | 96.497 | 213,553 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 214,659 | 205,009 | 95.504 | 182,613 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 194,238 | 187,563 | 96.563 | 175,675 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
| 8-Gag1 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 168,558 | 162,644 | 96.491 | 142,232 | 174,538 | 170,855.5 | 97.887 | 149,389.5 |
| 1-Gag2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 261,690 | 254,353 | 97.196 | 239,246 | 255,814 | 250,748.5 | 98.021 | 236,247 |
| 2-Gag2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 301,210 | 292,386 | 97.07 | 277,966 | 252,200 | 246,969 | 97.943 | 236,556.5 |
| 3-Gag2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 314,132 | 304,288 | 96.866 | 280,176 | 274,131 | 267,877 | 97.715 | 247,425.5 |
| 4-Gag2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 307,190 | 291,047 | 94.745 | 240,041 | 248,404 | 238,682.5 | 96.08 | 194,381.5 |
| 5-Gag2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 267,436 | 260,260 | 97.317 | 247,667 | 243,113 | 238,042 | 97.914 | 225,207.5 |
| 6-Gag2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 240,032 | 231,727 | 96.54 | 210,867 | 223,236 | 217,140 | 97.271 | 193,763.5 |
| 7-Gag2 | | L02-060406-PV1-R1 analysis | L02-060406-PV1-R1 comp matrix | 226,902 | 221,137 | 97.459 | 210,904 | 237,766.5 | 232,611.5 | 97.83 | 219,112 |
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