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HIV Study Tutorial
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01-11A12-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12 Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

Cannot control dataset key when copying assay to study

As far as I can tell, there is no way to control/define the key of a dataset that is created when you copy an assay to study. The dataset created by copy-to-study always seems to have RowId as an additional key column (in addition to ParticipantId and SequenceNum). I understand that this is the safest thing for LabKey code to do, since it can't know if ParticipantId+SequenceNum is unique, and can't...

lin_384_well_metadata.xls

data SampleWellGroup PlateLocation SpecimenID ParticipantID VisitID Date SampleDescription Lot Number InitialDilution Factor Method Specimen 1 A3-A4 4E10 Antibody Lot 1 10 3 Concentration Specimen 2 B3-B4 2F5 Antibody Lot 1 10 3 Concentration Specimen 3 C3-C4 2G12 Antibody Lot 1 10 3 Concentration Specimen 4 D3-D4 sCD4 Antibody Lot 1 10 3 Concentration Specimen 5 E3-E4 HIVIG Antibody...

"labkey.log" attached to message "Error while running trigger script"

INFO ScriptService$Console 2020-04-07 17:59:07,547 io-127.0.0.1-8080-exec-4 : ** evaluating: queries/study/BasicsCase.js INFO ScriptService$Console 2020-04-07 17:59:07,584 io-127.0.0.1-8080-exec-4 : Getting entries in BasicsCase, success: 33 rows returned. INFO ScriptService$Console 2020-04-07 17:59:07,584 io-127.0.0.1-8080-exec-4 : Selected rows BasicsCase: INFO ScriptService$Console...

Problem with Sequest search in CPAS 8.1

I am trying to run Sequest searches through the LabKey SequestQueue, however, the import of the data into CPAS 8.1 fails. Initally, I had the same problem as reported in the thread "sequest search retrieval error in v8.1" (https://www.labkey.org/announcements/home/CPAS/Forum/thread.view?rowId=2398). I updated to LabKeySequestQueue8.1-8662, which fixed the pep.xml conversion problem, however, the...

"getContainers-atlas-test.txt" attached to message "Strange behavior with LABKEY.Security.getContainers() function"

https://atlas-test.scharp.org/cpas/project/HVTN/Specimen%20Management/Lab%20Program/begin.view? https://atlas-test.scharp.org/cpas/project/HVTN/getContainers.view?_dc=1348616911600&container=%2FHVTN%2FSpecimen%20Management%2FLab%20Program%2F&includeSubfolders=false _dc=1348616911600 container=/HVTN/Specimen Management/Lab Program/ includeSubfolders=false { "sortOrder": 0, "children": [...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

01-11A12b-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12b-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12b Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

01-11A12b-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12b-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12b Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

01-11A12b-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12b-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12b Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

01-11A12b-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12b-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12b Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

01-11A12b-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12b-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12b Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

"Compare_Search_Engine_Proteins_2007-11-16 12_12_32.706.xls" attached to message "IPI repeated in Search Engine Comparison"

Compare Search Engine Proteins Numbers below represent total peptides and unique peptides mapping to each protein in each run. Peptide Filter: (PeptideProphet >= 0.9) AND (Trypic Ends >= 1) Protein Filter: interact-GLHDLT5D.pep.xml (interact-GLHDLT5D.prot.xml) interact-GLHDLT5C.pep.xml (interact-GLHDLT5C.prot.xml) interact-GLHDLT5B.pep.xml (interact-GLHDLT5B.prot.xml) interact-GLHDLT5A.pep.xml...

"AID_fluoro5.xlsx" attached to page "FluoroSpot Assay"

PlateData Plate:48 h incubation reading 10282014 Cy5 FITC cy3, Date:Tuesday, October 28, 2014, User: enzymatic, Path: R:\Users\MNPH\Fluorospot\Fluorospot 2014\CTL IFN IL4\48 h incubation reading 10282014 Cy5 FITC cy3\48 h incubation reading 10282014 Cy5 FITC cy3\48 h incubation reading 10282014 Cy5 FITC cy3.plt Plate Data - Spots Number(in first image: FITC) 1 2 3 4 5 6 7 8 9 10 11 12 A...

"cpas.log" attached to message "error executing /_views/HomeTemplate.gm"

19 Jan 2006 15:00:05,481 DEBUG ModuleLoader : ModuleLoader init 19 Jan 2006 15:00:05,613 DEBUG CoreModule : Ensuring databases are present 19 Jan 2006 15:00:05,738 DEBUG CoreModule : Successful connection to cpasDataSource at jdbc:postgresql://localhost:5432/cpas 19 Jan 2006 15:00:05,810 INFO DbSchema : Loading DbSchema "core" from "PostgreSQL" at "jdbc:postgresql://localhost:5432...

"MFL25-101906-pl1011.log" attached to message "upload failed due to Unexpected '<' in attribute value"

25 Jan 2007 17:08:21,151 INFO : X! Tandem search for MFL25-101906-pl1011.mzXML 25 Jan 2007 17:08:21,159 INFO : ======================================= 25 Jan 2007 17:08:21,667 INFO : tandem.exe output 25 Jan 2007 17:08:21,668 INFO : ======================================= 25 Jan 2007 17:08:21,671 INFO : running: tandem.exe input.xml 25 Jan 2007 17:08:21,742 INFO : 25 Jan 2007 17:08:21,746 INFO :...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...