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HIV Study Tutorial
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10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

dataset5007.tsv

ParticipantId date QCStateLabel CD4 Lymphocytes Hemoglobin ViralLoad 101344 2008-04-30 00:00:00.0 811 1491 14.0 101344 2008-05-28 00:00:00.0 794 1446 13.0 101344 2008-06-25 00:00:00.0 653 1560 12.0 101344 2008-07-23 00:00:00.0 1176 1486 11.0 101344 2008-08-20 00:00:00.0 1292 1343 11.0 101344 2008-09-17 00:00:00.0 1210 1186 12.0 101344 2008-10-15 00:00:00.0 1158 1320 13.0 101344 2008-11-12...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0952.tsv

ParticipantId date QCStateLabel CD4 Lymphocytes Hemoglobin ViralLoad 101344 2008-04-30 00:00:00.0 811 1491 14.0 101344 2008-05-28 00:00:00.0 794 1446 13.0 101344 2008-06-25 00:00:00.0 653 1560 12.0 101344 2008-07-23 00:00:00.0 1176 1486 11.0 101344 2008-08-20 00:00:00.0 Not Yet Reviewed 1292 1343 11.0 10000 101344 2008-09-17 00:00:00.0 1210 1186 12.0 101344 2008-10-15 00:00:00.0 1158 1320...

"error.log" attached to message "Error comparing MS2 runs"

ERROR Table 2008-04-22 12:20:05,726 t: http-8080-Processor17 : internalExecuteQuery org.postgresql.util.PSQLException: ERROR: integer out of range at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1592) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1327) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:192)...

"Test.csv" attached to message "List with timestamps unsorted"

Date Time SpO2-O2(%) HR-HR(bpm) RR-RR(rpm) Pulse-Pulse(bpm) 2020-05-13 12:00:04.054 ? 61 2020-05-13 12:00:05.078 154 42 2020-05-13 12:00:06.103 152 40 2020-05-13 12:00:07.127 152 42 2020-05-13 12:00:08.152 150 44 2020-05-13 12:00:09.176 151 45 2020-05-13 12:00:10.201 151 46 2020-05-13 12:00:11.225 151 45 2020-05-13 12:00:12.250 152 47 2020-05-13 12:00:13.274 154 47 ...

What is the new way to build and include custom modules on a dev machine?

Good morning! I am running the following version of the Labkey server at the moment: [09:26:28]:~/Labkey/release/server svn info Path: . URL: https://hedgehog.fhcrc.org/tor/stedi/branches/modules13.2/server Repository Root: https://hedgehog.fhcrc.org/tor/stedi Repository UUID: a4ab64de-fbdc-0310-83ae-be1847ca59a0 Revision: 27966 Node Kind: directory Schedule: normal Last Changed Author:...

"050727-Brachypodium-SDS-spot_418.xtan.xml" attached to message "FATAL: Upload FAILED"

Rs_BP|59353pri:N|_4 3e-19 UniRef90_Q948Y7 VMP3 protein related cluster QQTPTKTPRT GHSAIVQRWW RCSIQCHGRQ AGFCRTGDVR RQGSVNGSRE **DRRRRRGK WRGRAWRRGR AGGARGMAAW IGGARREGCR RGGATAESSR GGGGGGARER RPGGM*ARRG MRRAGSLWRG TVGGRGAAGR AAAGSGRGGG CRRRGRPRRS *RAPRGAPPG RSPPRWPQP* WRTPRP*RRP SRRAGGWPRP *GGRRRGVLS VALCPDEG 050727-Brachypodium-SDS-spot_418.mzXML scan 415 (charge 2) 1315.6...

"CAexample_mini.log" attached to message "CPAS / Mascot Timeout"

01 Feb 2007 12:39:41,243 INFO : Mascot search for CAexample_mini.mzXML 01 Feb 2007 12:39:41,243 INFO : ======================================= 01 Feb 2007 12:39:41,338 INFO : MzXML2Search output 01 Feb 2007 12:39:41,338 INFO : ======================================= 01 Feb 2007 12:39:41,342 INFO : running: MzXML2Search -mgf CAexample_mini.mzXML 01 Feb 2007 12:39:41,419 INFO : 01 Feb 2007 12:39:41,420...

"cpas.log" attached to message "Protein prophet import fails"

22 May 2007 21:22:05,401 INFO : X! Tandem search for A431_TotExtract_SILAC_Frac37to48.mzXML 22 May 2007 21:22:05,404 INFO : ======================================= 22 May 2007 21:49:16,736 INFO : X! Tandem search for A431_TotExtract_SILAC_Frac37to48.mzXML 22 May 2007 21:49:16,752 INFO : ======================================= ************************** + PATH=/stf/scratch/cluster/cpas/bin:/stf/home...

"catalina.out" attached to message "ModuleLoader init NullPointerException"

/usr/sbin/dtomcat6: line 60: /usr/share/tomcat6/logs/catalina.out: Permission denied Nov 13, 2011 7:42:17 PM org.apache.catalina.core.AprLifecycleListener init INFO: Loaded APR based Apache Tomcat Native library 1.1.20. Nov 13, 2011 7:42:17 PM org.apache.catalina.core.AprLifecycleListener init INFO: APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true]. Nov 13, 2011...

Luminex_Assay_200-2015-06-09-1230.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

"ms2.module" attached to message "Sequest Fractions XAR import failed"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 9275 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release8.2/server BuildUser: jeckels BuildTime: August 7 2008, 10:25 AM BuildOS: Windows 2003 BuildPath: D:\\release8.2\\server\\modules\\ms2 (הלא�ט+ו�¦���_��¬¦���¦...

"labkey.log" attached to message "Java Error Message"

INFO DbScope 2014-01-14 09:20:04,294 localhost-startStop-1 : Attempting to create database "labkey" INFO DbScope 2014-01-14 09:20:04,824 localhost-startStop-1 : Database "labkey" created INFO DbScope 2014-01-14 09:20:04,965 localhost-startStop-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"rebuild.txt" attached to message "gradle build: intellij hot swapping not working anymore?"

Information:java: Errors occurred while compiling module 'api_main' Information:javac 1.8.0_131 was used to compile java sources Information:12/11/2017 1:50 PM - Compilation completed with 41 errors and 1,085 warnings in 24m 15s 511ms C:\discvr17.2\externalModules\snprcEHRModules\snprc_r24\resources\transform\src\MicrobiomeTransform.java Warning:Warning:line (46)java: getCellType() in org.apache.poi.ss.usermodel.Cell...

"F004268.dat" attached to message "Mascot2XML"

MIME-Version: 1.0 (Generated by Mascot version 1.0) Content-Type: multipart/mixed; boundary=gc0p4Jq0M2Yt08jU534c0p --gc0p4Jq0M2Yt08jU534c0p Content-Type: application/x-Mascot; name="parameters" LICENSE=Licensed to: British Columbia Cancer Research Centre, Genome Sciences Ctr. (0262), (6 processors). MP= NM= COM=Submitted from Nobu's samples by Mascot Daemon on PROTEOMICS-1 (blank 005) IATOL= IA2TOL=...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...