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HIV Study Tutorial
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"FASTALoadError.log" attached to message "FASTA loading error"

09 May 2007 09:11:16,625 INFO : Sequest search for CNBr_Hse2 09 May 2007 09:11:16,625 INFO : ======================================= 09 May 2007 09:11:17,015 INFO : MzXML2Search output 09 May 2007 09:11:17,015 INFO : ======================================= 09 May 2007 09:11:17,625 INFO : running: MzXML2Search -dta -M2 -C1-2-3 -P10 07-0199.mzXML 09 May 2007 09:11:19,531 INFO : 09 May 2007 09:11:19,531...

"ms2.module" attached to message "Mascot error in CPAS"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_06-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: Not built from a Subversion source tree SVNURL: Not built from a Subversion source tree BuildUser: CheeHong BuildTime: March 15 2008, 1:09 AM BuildOS: Windows XP BuildPath: F:\\CPL\\tor\\stedi\\branches\\release2.3\\server\\modules\...

"ms2.module" attached to message "Mascot error in CPAS"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_06-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: Not built from a Subversion source tree SVNURL: Not built from a Subversion source tree BuildUser: CheeHong BuildTime: March 12 2008, 6:05 PM BuildOS: Windows XP BuildPath: F:\\CPL\\tor\\stedi\\branches\\release2.3\\server\\modules\...

"20070928_ApoA1_Cathepsin_FTCID_01.xtan.xml" attached to message "run X!Tandem without TPP"

IPI00021841 IPI:IPI00021841.1|SWISS-PROT:P02647|TREMBL:Q6LEJ8;Q9UCT8|ENSEMBL:ENSP00000236850;ENSP00000352471;ENSP00000364469;ENSP00000364472;ENSP00000364478|REFSEQ:NP_000030|VEGA:OTTHUMP00000043268;OTTHUMP00000069346;OTTHUMP00000069347;OTTHUMP00000069348 Tax_Id=9606 Gene_Symbol=APOA1 Apolipoprotein A-I precursor MKAAVLTLAV LFLTGSQARH FWQQDEPPQS PWDRVKDLAT VYVDVLKDSG RDYVSQFEGS ALGKQLNLKL...

"F004268.dat" attached to message "Mascot2XML"

MIME-Version: 1.0 (Generated by Mascot version 1.0) Content-Type: multipart/mixed; boundary=gc0p4Jq0M2Yt08jU534c0p --gc0p4Jq0M2Yt08jU534c0p Content-Type: application/x-Mascot; name="parameters" LICENSE=Licensed to: British Columbia Cancer Research Centre, Genome Sciences Ctr. (0262), (6 processors). MP= NM= COM=Submitted from Nobu's samples by Mascot Daemon on PROTEOMICS-1 (blank 005) IATOL= IA2TOL=...

"G24_MSMS_1614.9180_11.t2d.mzXML" attached to message "Help on t2d format"

QFF5B8UIsWsAAAAAAAAAAEBRea/7Spu8AAAAAAAAAABAUXpYNLgyggAAAAAAAAAAQFF7AHFRddkAAAAAAAAAAEBRe6ixFmXgQBCgoKAAAABAUXxQ9AcCskA0AAAAAAAAQFF8+TojTiJAKlpaYAAAAEBRfaGDa0TnQCG5ucAAAABAUX5Jz97qgj/rm5ugAAAAQFF+8h9+PWE/4ZGRoAAAAEBRf5pyST2eP84eHkAAAABAUYBCyD/rWj+0FBQgAAAAQFGA6yFiSGIAAAAAAAAAAEBRgZN9sFMjAAAAAAAAAABAUYI73SoKBAAAAAAAAAAAQFGC5D/PcI4AAAAAAAAAAEBRg4yloIUmAAAAAAAAAABAUYQ1Dp1H7AAAAAAAAAAAQFGE3XrFuPwAAAAAAAAAAEBRhYXqGdorAAAAAAAAAABAUYYuXJmoKQAAAAAAAAAAQFGG1tJFJoA...

"cpas[1].log.1" attached to message "500: Unexpected server error"

03 Feb 2006 10:46:57,287 ERROR Global : Unhandled exception caught in Global.app: 500: Unexpected server error java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at org.fhcrc.cpas.util.BoundMap.get(BoundMap.java:89) at org.fhcrc.cpas.view.GroovyView.createModelBinding(GroovyView.java:475) at org.fhcrc.cpas.view.GroovyView.renderView(GroovyView.java:447) at org.fhcrc.cpas.view.WebPartView.render(WebPartView.java:123)...

"cpas.log.1" attached to message "500: Unexpected server error"

03 Feb 2006 10:46:57,287 ERROR Global : Unhandled exception caught in Global.app: 500: Unexpected server error java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at org.fhcrc.cpas.util.BoundMap.get(BoundMap.java:89) at org.fhcrc.cpas.view.GroovyView.createModelBinding(GroovyView.java:475) at org.fhcrc.cpas.view.GroovyView.renderView(GroovyView.java:447) at org.fhcrc.cpas.view.WebPartView.render(WebPartView.java:123)...

"labkey.log" attached to message "MS SQL Server problem"

INFO ModuleLoader 2015-09-15 13:33:36,894 localhost-startStop-1 : __ || | _ |_ |/ _ (� _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / INFO DbScope 2015-09-15 13:33:39,144 localhost-startStop-1 : Initializing DbScope with the following configuration: DataSource Name:...

"500_ Error Page .htm" attached to message "Server error upon automatic cohort creation"

Emory University Development LabKey Server DHO_Healthy Aging_Workspace ...

"050727-Brachypodium-SDS-spot_418.xtan.xml" attached to message "FATAL: Upload FAILED"

Rs_BP|59353pri:N|_4 3e-19 UniRef90_Q948Y7 VMP3 protein related cluster QQTPTKTPRT GHSAIVQRWW RCSIQCHGRQ AGFCRTGDVR RQGSVNGSRE **DRRRRRGK WRGRAWRRGR AGGARGMAAW IGGARREGCR RGGATAESSR GGGGGGARER RPGGM*ARRG MRRAGSLWRG TVGGRGAAGR AAAGSGRGGG CRRRGRPRRS *RAPRGAPPG RSPPRWPQP* WRTPRP*RRP SRRAGGWPRP *GGRRRGVLS VALCPDEG 050727-Brachypodium-SDS-spot_418.mzXML scan 415 (charge 2) 1315.6...

"09FEB02_OT_57.dat" attached to message "Java Heap Memory Errors"

MIME-Version: 1.0 (Generated by Mascot version 1.0) Content-Type: multipart/mixed; boundary=gc0p4Jq0M2Yt08jU534c0p --gc0p4Jq0M2Yt08jU534c0p Content-Type: application/x-Mascot; name="parameters" LICENSE=Licensed to: NIH Central Mascot Server (263-MD-216066), (6 processors). MP= NM= COM=Conversion of E:\Sandy\Dhaval\Controls\@files\Control\mascot\PSD_protocol_Copy9\09FEB02_OT_57.work\09FEB02_OT_57.mzXML...

Luminex_Assay_200-2015-06-09-1216.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

Luminex_Assay_200-2015-06-09-1231.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

Luminex_Assay_200-2015-06-09-1226.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

"labkey.log" attached to message "MS SQL Server problem"

INFO ModuleLoader 2015-09-16 10:46:56,502 localhost-startStop-1 : __ || | _ |_ |/ _ (� _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / INFO DbScope 2015-09-16 10:46:58,752 localhost-startStop-1 : Attempting to create database "TEST_LabKey2" INFO DbScope ...

"o261_08mar17_02_sec9.log" attached to message "Xinteract being called with -d"..\..\.." errors out during XPressPeptideParser TPP xinteract ver 4.3.1"

25 Feb 2011 11:43:09,218 INFO : Mascot search for o261_08mar17_02_sec9 25 Feb 2011 11:43:09,218 INFO : ======================================= 25 Feb 2011 11:43:09,265 INFO : Starting to run task 'org.labkey.ms2.pipeline.FastaCheckTask' at location 'webserver-fasta-check' 25 Feb 2011 11:43:09,265 INFO : Check FASTA validity 25 Feb 2011 11:43:09,265 INFO : =======================================...

"logfile-error.txt" attached to message "NCBI database - annotatins problem?"

17 Dec 2010 16:53:15,752 INFO : Mascot search for 01 17 Dec 2010 16:53:15,752 INFO : ======================================= 17 Dec 2010 16:53:15,846 INFO : Starting to run task 'org.labkey.ms2.pipeline.FastaCheckTask' at location 'webserver-fasta-check' 17 Dec 2010 16:53:15,846 INFO : Check FASTA validity 17 Dec 2010 16:53:15,846 INFO : ======================================= 17 Dec 2010 16:53:15,846...

"LabkeyErrorLog.txt" attached to message "Copy to Study suddenly broken"

INFO SystemMaintenance 2011-10-11 02:00:13,134 System Maintenance : System maintenance started INFO SystemMaintenance 2011-10-11 02:00:13,137 System Maintenance : Search Service Maintenance started INFO SystemMaintenance 2011-10-11 02:00:35,659 System Maintenance : Search Service Maintenance complete; elapsed time 22 seconds INFO SystemMaintenance ...

"MTP_A06.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

19 Jun 2009 11:51:49,085 INFO : Copying C:\Inetpub\wwwroot\ISB\data\LCMS_data\Argo_BS\RAW\MTP_A06.mzXML to C:\Inetpub\wwwroot\ISB\data\LCMS_data\Argo_BS\RAW\mascot\Argo_Mascot\MTP_A06.work\MTP_A06.mzXML 19 Jun 2009 11:52:23,225 INFO : MzXML2Search output 19 Jun 2009 11:52:24,507 INFO : ======================================= 19 Jun 2009 11:52:24,538 INFO : Working directory is C:\Inetpub\wwwroot\ISB\data\LCMS_data\Argo_BS\RAW\mascot\Argo_Mascot\MTP_A06.work...