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HIV Study Tutorial
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07-12A81-IgA-Biotin.xls

ENV1 (31) File Name: 07-12A81-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 01:21 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 07-12A81 Signed By: Steve Hanson Document ID: 9996 RP1 PMT (Volts): 738.22 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

07-12A81-IgA-Biotin.xls

ENV1 (31) File Name: 07-12A81-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 01:21 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 07-12A81 Signed By: Steve Hanson Document ID: 9996 RP1 PMT (Volts): 738.22 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

Troubleshoot Installation and Configuration

In case of errors or other problems when installing and running LabKey Server, first review installation basics and options linked in the topic: config. This topic provides additional troubleshooting suggestions if the instructions in that topic do not resolve the issue. LabKey Logs Log Rotation and Storage Service Startup Must Create labkey-tmp Location Linux Service Troubleshooting...

"cpas.log" attached to message "CPAS.XML Database setup"

20 Dec 2005 16:50:51,091 DEBUG CoreModule : Connection to cpasDataSource at jdbc:postgresql://otrs.genophobe.org:8090/cpas failed with the following error: 20 Dec 2005 16:50:51,091 DEBUG CoreModule : Message: The connection attempt failed. SQLState: 08001 ErrorCode: 0 20 Dec 2005 16:50:51,091 DEBUG CoreModule : org.postgresql.util.PSQLException: The connection attempt failed. 20 Dec 2005...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

"060517_Peach_Obenland_Tryp_A_5.log" attached to message "Loading Experiment Hangs"

20 Jun 2006 16:31:25,984 INFO : X! Tandem search for 060517_Peach_Obenland_Tryp_A_5.mzXML 20 Jun 2006 16:31:26,015 INFO : ======================================= 21 Jun 2006 05:10:54,218 INFO : tandem.exe output 21 Jun 2006 05:10:54,234 INFO : ======================================= 21 Jun 2006 05:10:54,234 INFO : running: tandem.exe input.xml 21 Jun 2006 05:10:54,281 INFO : 21 Jun 2006 05:10:54,281...

"Compare_Search_Engine_Proteins_2007-11-16 12_12_32.706.xls" attached to message "IPI repeated in Search Engine Comparison"

Compare Search Engine Proteins Numbers below represent total peptides and unique peptides mapping to each protein in each run. Peptide Filter: (PeptideProphet >= 0.9) AND (Trypic Ends >= 1) Protein Filter: interact-GLHDLT5D.pep.xml (interact-GLHDLT5D.prot.xml) interact-GLHDLT5C.pep.xml (interact-GLHDLT5C.prot.xml) interact-GLHDLT5B.pep.xml (interact-GLHDLT5B.prot.xml) interact-GLHDLT5A.pep.xml...

"Test.csv" attached to message "List with timestamps unsorted"

Date Time SpO2-O2(%) HR-HR(bpm) RR-RR(rpm) Pulse-Pulse(bpm) 2020-05-13 12:00:04.054 ? 61 2020-05-13 12:00:05.078 154 42 2020-05-13 12:00:06.103 152 40 2020-05-13 12:00:07.127 152 42 2020-05-13 12:00:08.152 150 44 2020-05-13 12:00:09.176 151 45 2020-05-13 12:00:10.201 151 46 2020-05-13 12:00:11.225 151 45 2020-05-13 12:00:12.250 152 47 2020-05-13 12:00:13.274 154 47 ...

"CAexample_mini.log" attached to message "CPAS / Mascot Timeout"

01 Feb 2007 12:39:41,243 INFO : Mascot search for CAexample_mini.mzXML 01 Feb 2007 12:39:41,243 INFO : ======================================= 01 Feb 2007 12:39:41,338 INFO : MzXML2Search output 01 Feb 2007 12:39:41,338 INFO : ======================================= 01 Feb 2007 12:39:41,342 INFO : running: MzXML2Search -mgf CAexample_mini.mzXML 01 Feb 2007 12:39:41,419 INFO : 01 Feb 2007 12:39:41,420...

Luminex_Assay_200-2015-06-09-1237.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

"ms2.module" attached to message "Sequest Fractions XAR import failed"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 9275 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release8.2/server BuildUser: jeckels BuildTime: August 7 2008, 10:25 AM BuildOS: Windows 2003 BuildPath: D:\\release8.2\\server\\modules\\ms2 (הלא�ט+ו�¦���_��¬¦���¦...

HIV Disease Progression - Demo Study-ViralLoad (NASBA Method)-2019-04-11-0936.tsv

Participant ID Date Day ViralLoad (NASBA Method) Treatment Group ARVRegime Type 101344 39568 3 100 ARV ETR 101344 39596 31 193324 ARV ETR 101344 39624 59 59582 ARV ETR 101344 39652 87 702 ARV ETR 101344 39680 115 309 ARV ETR 101344 39708 143 720 ARV ETR 101344 39736 171 287 ARV ETR 101344 39764 199 183 ARV ETR 101344 39792 227 149 ARV ETR 101344 39820 255 99 ARV ETR 101344 39848 283 1980 ARV ETR 101344...

dataset5006.tsv

ParticipantId date QCStateLabel HIVWestern HIVStdAntibody HIVLoadIneq HIVLoadQuant HIVLoadQual HIVRapidTest HIVSourceLab 103866 2008-04-30 00:00:00.0 0 103866 2008-05-28 00:00:00.0 183255 103866 2008-06-25 00:00:00.0 38618 103866 2008-07-23 00:00:00.0 7774 103866 2008-08-20 00:00:00.0 3125 103866 2008-09-17 00:00:00.0 2489 103866 2008-11-12 00:00:00.0 ...

"rebuild.txt" attached to message "gradle build: intellij hot swapping not working anymore?"

Information:java: Errors occurred while compiling module 'api_main' Information:javac 1.8.0_131 was used to compile java sources Information:12/11/2017 1:50 PM - Compilation completed with 41 errors and 1,085 warnings in 24m 15s 511ms C:\discvr17.2\externalModules\snprcEHRModules\snprc_r24\resources\transform\src\MicrobiomeTransform.java Warning:Warning:line (46)java: getCellType() in org.apache.poi.ss.usermodel.Cell...

"F004268.dat" attached to message "Mascot2XML"

MIME-Version: 1.0 (Generated by Mascot version 1.0) Content-Type: multipart/mixed; boundary=gc0p4Jq0M2Yt08jU534c0p --gc0p4Jq0M2Yt08jU534c0p Content-Type: application/x-Mascot; name="parameters" LICENSE=Licensed to: British Columbia Cancer Research Centre, Genome Sciences Ctr. (0262), (6 processors). MP= NM= COM=Submitted from Nobu's samples by Mascot Daemon on PROTEOMICS-1 (blank 005) IATOL= IA2TOL=...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...