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"labkey.log" attached to message "FastaAdmin already exists"

ERROR DavCrawler 2015-04-29 01:01:12,397 DavCrawler : Unexpected error org.labkey.api.util.ConfigurationException: Can't create a database connection to org.apache.tomcat.dbcp.dbcp.BasicDataSource@830d625 at org.labkey.api.data.DbScope._getConnection(DbScope.java:657) at org.labkey.api.data.DbScope.getConnection(DbScope.java:472) at org.labkey.api.data.JdbcCommand.getConnection(JdbcCommand.java:55)...

"ms2.module" attached to message "mzXML2search and mascot server error 26"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.1 Created-By: 11.2-b01 (Sun Microsystems Inc.) config/module.xml config/ms2Context.xml ...

"ms2.module" attached to message "Problem with loading uniprot_sprot.xml annotation file"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.0 Created-By: 1.6.0_01-b06 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 7137 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.2/serve r BuildUser: jeckels BuildTime: October 1 2007, 5:15 PM BuildOS: Windows Vista BuildPath: c:\\labkey2.2\\server\\modules\\ms2 META-INF...

"ms2.module" attached to message "Problem running xinteract in Labkey version 2.1"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.0 Created-By: 1.6.0_01-b06 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 6629 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.1/serve r BuildUser: jeckels BuildTime: July 6 2007, 5:24 PM BuildOS: Windows Vista BuildPath: c:\\labkey2.1\\server\\modules\\ms2 META-INF...

"ms2.module" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) config/module.xml config/ms2Context.xml ...

"catalina.out" attached to message "Labkey error"

Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.62 Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: May 7 2015 17:14:55 UTC Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.62.0 Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener...

"labkey.log" attached to message "Error during configuration"

ERROR DavCrawler 2016-04-07 12:01:27,657 DavCrawler : Unexpected error org.labkey.api.util.ConfigurationException: Can't create a database connection to org.apache.tomcat.dbcp.dbcp2.BasicDataSource@171cc93b at org.labkey.api.data.DbScope._getConnection(DbScope.java:795) at org.labkey.api.data.DbScope.getConnection(DbScope.java:619) at org.labkey.api.data.JdbcCommand.getConnection(JdbcCommand.java:55)...

"labkey.log" attached to message "Java Heap Memory Errors"

INFO DbScope 2010-07-20 15:31:53,233 Thread-1 : Attempting to create database "labkey" INFO DbScope 2010-07-20 15:31:56,858 Thread-1 : Database "labkey" created INFO DbScope 2010-07-20 15:31:56,920 Thread-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"labkey.log" attached to message "Out of Memory Errors"

INFO DbScope 2010-07-20 15:31:53,233 Thread-1 : Attempting to create database "labkey" INFO DbScope 2010-07-20 15:31:56,858 Thread-1 : Database "labkey" created INFO DbScope 2010-07-20 15:31:56,920 Thread-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"cpas.log" attached to message "drt failure"

DEBUG OntologyManager 2006-06-23 10:47:18,390 JobThread-3.2 : getPropertyDescriptor for flow.cpas.fhcrc.org#statistic.Singlets/L/Live/3+/4+/(IFNg+&!IL2+&!IL4+&TNF+):Count container= /FlowVerifyProject/flowFolder returns from Cache object flow.cpas.fhcrc.org#statistic.Singlets/L/Live/3+/4+/(IFNg+&!IL2+&!IL4+&TNF+):Count name=Singlets/L/Live/3+/4+/(IFNg+&!IL2+&!IL4+&TNF+):Count project=/Shared...

"labkey.log" attached to message "Mascot Default Parameters file"

INFO DbScope 2010-07-20 15:31:53,233 Thread-1 : Attempting to create database "labkey" INFO DbScope 2010-07-20 15:31:56,858 Thread-1 : Database "labkey" created INFO DbScope 2010-07-20 15:31:56,920 Thread-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"warburton_300nL_0718.xtan.xml" attached to message "XTandem search results in CPAS 1.7 vs 2.1"

IPI:IPI00280984.5|SWISS-PROT:O08919 Tax_Id=10090 Numb-like protein MSRSAAASGG PRRPDQHLSP APCGASGPPE TFRTESDGAG TMNKLRQSLR RRKPAYVPEA SRPHQWQADE DAVRKGTCSF PVRYLGHVEV EESRGMHVCE DAVKKLKAMG RKSVKSVLWV SADGLRVVDD KTKDLLVDQT IEKVSFCAPD RNLDKAFSYI CRDGTTRRWI CHCFLALKDS GERLSHAVGC AFAACLERKQ RREKECGVTA AFDASRTSFA REGSFRLSGG GRPAEREAGD KKKAEAAAAP AVAPGPAQPG HVSPTPATTS PGEKGEAGTP VAAGTTAAAI...

"warburton_300nL_0718.xtan.xml" attached to message "XTandem search results in CPAS 1.7 vs 2.1"

IPI:IPI00467912.2|ENSEMBL:ENSMUSP00000078748 Tax_Id=10090 36 kDa protein PERRLLAIYT GGTIGMRSEG GGCHSPAPHP SWRSPWSPAS PDQRIIYTVL ECQPLFDSSD MTITEWVQIA QTIERHYAQY QGFVVIHGTD TMAFAASVLS FMLENLQKPV VLTGAQVPIH ALWSDGRENL LGALLMAGQY VIPEVCLFFQ NQLFRGNRTT KVDARRFAAF CSPNLPPLAT VGADVTTKKF LSVTACGSAV YIGSSVVISP VVLSSENTPK SVLPAQVRTF LQPPLKGVVM ETFGSGNGPT KPDLLQELRV AAEQGLIIVN CTHCLQGAVT SDYASGMAMA...

"warburton_300nL_0718.xtan.xml" attached to message "XTandem search results in CPAS 1.7 vs 2.1"

IPI:IPI00467912.2|ENSEMBL:ENSMUSP00000078748 Tax_Id=10090 36 kDa protein PERRLLAIYT GGTIGMRSEG GGCHSPAPHP SWRSPWSPAS PDQRIIYTVL ECQPLFDSSD MTITEWVQIA QTIERHYAQY QGFVVIHGTD TMAFAASVLS FMLENLQKPV VLTGAQVPIH ALWSDGRENL LGALLMAGQY VIPEVCLFFQ NQLFRGNRTT KVDARRFAAF CSPNLPPLAT VGADVTTKKF LSVTACGSAV YIGSSVVISP VVLSSENTPK SVLPAQVRTF LQPPLKGVVM ETFGSGNGPT KPDLLQELRV AAEQGLIIVN CTHCLQGAVT SDYASGMAMA...