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linking specimien to assay

Is there a link from assay data to the specimen that was used in the specimen repository. For example, using the tutorial data and the Microarray assay, is there a way to determine and view specimen used for each run? If I select an assay from the miccroarray dataset and select "View Specimens" it gives an empty list with the message: This view is displaying specimens only from particpant(s) 249320489...

Weight by Time.db_64.report.xml

Reports - Deprecated true timeChartReportDescriptor Weight by Time 10.39 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"subjects","displayIndividual":true,"displayAggregate":false,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Physical Exam","measures":[{"measure":{"id":34,"name":"Weight_kg","label":"Weight...

CD4+ Levels Per Participant.report.xml

Reports CD4+ Levels Per Participant false timeChartReportDescriptor 14.1 ReportService.TimeChartReport CD4+ Levels Per Participant {"chartLayout":"single","chartSubjectSelection":"subjects","displayIndividual":true,"displayAggregate":false,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"CD4+ Levels...

Weight by Time.report.xml

Reports - Deprecated Weight by Time true timeChartReportDescriptor 10.39 ReportService.TimeChartReport Weight by Time {"chartLayout":"single","chartSubjectSelection":"subjects","displayIndividual":true,"displayAggregate":false,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Physical Exam","measures":[{"measure":{"id":34,"name":"Weight_kg","label":"Weight...

Viral Load per Participant.db_61.report.xml

Reports - Deprecated true timeChartReportDescriptor Viral Load per Participant 12.2 ReportService.TimeChartReport {"chartLayout":"per_subject","chartSubjectSelection":"subjects","displayIndividual":true,"displayAggregate":false,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"HIV Test Results","measures":[{"measure":{"id":41,"name":"HIVLoadQuant","label":"Viral...

Viral Load per Participant.report.xml

Reports - Deprecated Viral Load per Participant true timeChartReportDescriptor 12.2 ReportService.TimeChartReport Viral Load per Participant {"chartLayout":"per_subject","chartSubjectSelection":"subjects","displayIndividual":true,"displayAggregate":false,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"HIV...

Lab Results - Mean CD4+ Count.db_40.report.xml

false timeChartReportDescriptor Lab Results - Mean CD4+ Count 13.3 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Lab Results - Mean CD4+ Count","measures":[{"measure":{"id":63,"name":"CD4","label":"CD4+...

Average CD4+ Levels Per Cohort.db_33.report.xml

Reports false timeChartReportDescriptor Average CD4+ Levels Per Cohort 12.1 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Average CD4+ Levels Per Cohort","measures":[{"measure":{"id":18,"name":"CD4","label":"CD4+...

Mean Lymphocyte Levels Per Treatment Group.report.xml

Reports Mean Lymphocyte Levels Per Treatment Group false timeChartReportDescriptor 13.3 ReportService.TimeChartReport Mean Lymphocyte Levels Per Treatment Group {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":2,"hideDataPoints":false,"pointClickFn":null,"title":"Lab...

Mean CD4+ Levels Per Treatment Group.report.xml

Reports Mean CD4+ Levels Per Treatment Group false timeChartReportDescriptor 13.3 ReportService.TimeChartReport Mean CD4+ Levels Per Treatment Group {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Average...

cohorts.xml

101344 103505 103866 107201 119180 120043 121933 125478 133428 140163 150489 150817 151224 154864 155805 160386 165074 166726 167572 172476 174815 175603 185014 186899 191927 209005 211137 213932 220376 226423 234482 237773 246655...

Lymphocyte Count_ Disease Progression without ARV.db_41.report.xml

Reports false timeChartReportDescriptor Lymphocyte Count: Disease Progression without ARV 12.2 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Lab Results","measures":[{"measure":{"id":48,"name":"Lymphocytes","label":"Lymphs...

dataset5013.tsv

ParticipantId date QCStateLabel RowId ObjectUri SpecimenLsid SpecimenLsid.LSID FitError WellGroupName AUC_Poly PositiveAUC_Poly AUC_4pl PositiveAUC_4pl AUC_5pl PositiveAUC_5pl SpecimenLsid.Property.SpecimenID SpecimenLsid.Property.VisitID SpecimenLsid.Property.SampleDescription SpecimenLsid.Property.InitialDilution SpecimenLsid.Property.Factor SpecimenLsid.Property.Method Cutoff50.Point Cutoff80.Point...

dataset5018.tsv

ParticipantId date QCStateLabel RowId Data Data.Name Protocol Protocol.Name WellRole Type Well Outlier Description SpecimenID ExtraSpecimenInfo FIString FI FIOORIndicator FINumber FIBackgroundString FIBackground FIBackgroundOORIndicator FIBackgroundNumber StdDevString StdDev StdDevOORIndicator StdDevNumber ObsConcString ObsConc ObsConcOORIndicator ObsConcNumber ExpConc ObsOverExp ConcInRange ConcInRangeOORIndicator...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-09492.tsv

ParticipantId sourcelsid date Day DataSets/Demographics/Gender oldcd4 Lymphocytes Hemoglobin DataSets/Demographics/Group DataSets/Demographics/TreatmentGroup CD4 119180 4/20/2008 0 f 239 1802 17 Group 1: Acute HIV-1 No ARV 120 119180 5/18/2008 28 f 266 1787 18 Group 1: Acute HIV-1 No ARV 133 119180 6/15/2008 56 f 224 1843 19 Group 1: Acute HIV-1 No ARV 112 119180 7/13/2008 84 f 163 1780 17 Group...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0949.tsv

ParticipantId sourcelsid date Day DataSets/Demographics/Gender oldcd4 Lymphocytes Hemoglobin DataSets/Demographics/Group DataSets/Demographics/TreatmentGroup CD4 119180 4/20/2008 0 f 239 1802 17 Group 1: Acute HIV-1 No ARV 120 119180 5/18/2008 28 f 266 1787 18 Group 1: Acute HIV-1 No ARV 133 119180 6/15/2008 56 f 224 1843 19 Group 1: Acute HIV-1 No ARV 112 119180 7/13/2008 84 f 163 1780 17 Group...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0948.tsv

ParticipantId sourcelsid date Day DataSets/Demographics/Gender oldcd4 Lymphocytes Hemoglobin DataSets/Demographics/Group DataSets/Demographics/TreatmentGroup CD4 119180 4/20/2008 0 f 239 1802 17 Group 1: Acute HIV-1 No ARV 119.5 119180 5/18/2008 28 f 266 1787 18 Group 1: Acute HIV-1 No ARV 133 119180 6/15/2008 56 f 224 1843 19 Group 1: Acute HIV-1 No ARV 112 119180 7/13/2008 84 f 163 1780 17 Group...

Demographics.xls

data Participant ID Date Start Date Height (inches) Gender Country Group Assignment Status of Infection Comments Treatment Group 101344 2008-04-27 2008-04-27 f 103505 2008-04-24 2008-04-24 f 103866 2008-04-21 2008-04-21 69 m USA Group 1: Acute HIV-1 Natural Controller 107201 2008-05-22 2008-05-22 f 110349 2008-04-28 2008-04-28 62 m USA Group 2: HIV-1 Negative 119180 2008-04-20 2008-04-20...

dataset5006.tsv

ParticipantId date QCStateLabel HIVWestern HIVStdAntibody HIVLoadIneq HIVLoadQuant HIVLoadQual HIVRapidTest HIVSourceLab 103866 2008-04-30 00:00:00.0 0 103866 2008-05-28 00:00:00.0 183255 103866 2008-06-25 00:00:00.0 38618 103866 2008-07-23 00:00:00.0 7774 103866 2008-08-20 00:00:00.0 3125 103866 2008-09-17 00:00:00.0 2489 103866 2008-11-12 00:00:00.0 ...

dataset5006.tsv

ParticipantId date QCStateLabel HIVWestern HIVStdAntibody HIVLoadIneq HIVLoadQuant HIVLoadQual HIVRapidTest HIVSourceLab 103866 2008-04-30 00:00:00.0 0 103866 2008-05-28 00:00:00.0 183255 103866 2008-06-25 00:00:00.0 38618 103866 2008-07-23 00:00:00.0 7774 103866 2008-08-20 00:00:00.0 3125 103866 2008-09-17 00:00:00.0 2489 103866 2008-11-12 00:00:00.0 ...