Protocol: Microarray Test: /home/Demos/Study/demo/Microarray Staging

Protocol: Microarray Test

Microarray Staging

Standard Properties

Name	Microarray Test
Contact
Instrument
Software
Description
Max input data per instance	1
Max input material per instance	1
Output data per instance
Output material per instance

Custom Properties

Microarray Test

urn:lsid:cpas.fhcrc.org:AssayDomain-Data.Folder-646:Microarray+Test

Protocol Parameters

MicroarrayAssay.Cy5SampleNameColumn	ProbeID_Cy5
MicroarrayAssay.ChannelCountXPath	/MAGE-ML/BioAssay_package/BioAssay_assnlist/MeasuredBioAssay/FeatureExtraction_assn/FeatureExtraction/ProtocolApplications_assnlist/ProtocolApplication/SoftwareApplications_assnlist/SoftwareApplication/ParameterValues_assnlist/ParameterValue[ParameterType_assnref/Parameter_ref/@identifier='Agilent.BRS:Parameter:Scan_NumChannels']/@value
XarTemplate.ApplicationLSID	${RunLSIDBase}:SimpleProtocol.InputStep
MicroarrayAssay.BarcodeXPath	/MAGE-ML/BioAssay_package/BioAssay_assnlist/MeasuredBioAssay/FeatureExtraction_assn/FeatureExtraction/ProtocolApplications_assnlist/ProtocolApplication/SoftwareApplications_assnlist/SoftwareApplication/ParameterValues_assnlist/ParameterValue[ParameterType_assnref/Parameter_ref/@identifier='Agilent.BRS:Parameter:FeatureExtractor_Barcode']/@value
MicroarrayAssay.Cy3SampleNameColumn	ProbeID_Cy3
MicroarrayAssay.SampleSetBarcodeFieldNames	Barcode
XarTemplate.ApplicationName	Microarray Test Protocol

Protocol Details

Material Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Inputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Material Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Sample Set Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Data Outputs

Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Data Class Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
No data to show.

Protocol Steps

Step	Name	Description
1	Microarray Test
10	Microarray Test - Core
20	Microarray Test - Output

Runs Using This Protocol

Select All Select None Show Selected Show Unselected Show All	Flag Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart		Name Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Created By Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Protocol Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Run Groups Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
			test2_MAGEML.xml	2009-06-01	eknelson	Microarray Test
			test1_MAGEML.xml	2009-06-01	eknelson	Microarray Test