The topics in this section cover managing, analyzing, and sharing high volumes of tandem mass spectrometry (MS2) data:

• Search MS2 Data Via the Pipeline: Analyze MS2 data using pipeline protocols.
• Set Up MS2 Search Engines: Select specific search engine.
• Search and Process MS2 Data: Configure parameters.
• Trigger MS2 Processing Automatically
• Set Proteomics Search Tools Version
• Explore the MS2 Dashboard
• View an MS2 Run
• Compare MS2 Runs
• Export MS2 Runs
• View, Filter and Export All MS2 Runs

Related Topics

• Discovery Proteomics Tutorial: Explore the basics using sample data in our tutorial.
• Run Groups