TPP 5.0 - InteractParser - buffer overflow detected | toan nguyen | 2018-01-05 11:28 | |||||||||
Status: Closed | |||||||||||
Hi, It appears InteractParser in TPP 5 is not working well. InteractParser in TPP 4.3 is working fine. Thanks Toan running: "/usr/local/tpp/bin/InteractParser 'xxxxxxxxxxxxxx_msprefix.pep.xml' 'xxxxxxxxxxxxxx_raw.pep.xml' -L'7'" file 1: xxxxxxxxxxxxxxxxxxx_msprefix_raw.pep.xml SUCCESS: CORRECTED data file /20171221-7339800375367778709.work/xxxxxxxxxxxxxxx_msprefix.mzXML in msms_run_summary tag ... SUCCESS: CORRECTED data file /20171221-7339800375367778709.work/xxxxxxxxxxxxxxx_msprefix.mzXML in msms_run_summary tag ... processed altogether 5147 results *** buffer overflow detected ***: /usr/local/tpp/bin/InteractParser terminated ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f2e805f47e5] /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f2e8069611c] /lib/x86_64-linux-gnu/libc.so.6(+0x117120)[0x7f2e80694120] /lib/x86_64-linux-gnu/libc.so.6(+0x116689)[0x7f2e80693689] /lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0x80)[0x7f2e805f86b0] /lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0xc90)[0x7f2e805cae00] /lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7f2e80693714] /lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7f2e8069366d] /usr/local/tpp/bin/InteractParser[0x414e4e] /usr/local/tpp/bin/InteractParser[0x40e1a0] /usr/local/tpp/bin/InteractParser[0x40abca] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f2e8059d830] /usr/local/tpp/bin/InteractParser[0x40ca29] ======= Memory map: ======== 00400000-0064b000 r-xp 00000000 08:01 393493 /usr/local/tpp/bin/InteractParser 0084b000-00876000 r--p 0024b000 08:01 393493 /usr/local/tpp/bin/InteractParser 00876000-008b5000 rw-p 00276000 08:01 393493 /usr/local/tpp/bin/InteractParser 008b5000-008ba000 rw-p 00000000 00:00 0 010e7000-0254b000 rw-p 00000000 00:00 0 [heap] 7f2e7fac9000-7f2e80488000 r--p 00000000 08:01 141861 /usr/lib/locale/locale-archive 7f2e8057d000-7f2e8073d000 r-xp 00000000 08:01 7054 /lib/x86_64-linux-gnu/libc-2.23.so 7f2e8073d000-7f2e8093d000 ---p 001c0000 08:01 7054 /lib/x86_64-linux-gnu/libc-2.23.so 7f2e8093d000-7f2e80941000 r--p 001c0000 08:01 7054 /lib/x86_64-linux-gnu/libc-2.23.so 7f2e80941000-7f2e80943000 rw-p 001c4000 08:01 7054 /lib/x86_64-linux-gnu/libc-2.23.so 7f2e80943000-7f2e80947000 rw-p 00000000 00:00 0 7f2e80947000-7f2e8095d000 r-xp 00000000 08:01 7092 /lib/x86_64-linux-gnu/libgcc_s.so.1 7f2e8095d000-7f2e80b5c000 ---p 00016000 08:01 7092 /lib/x86_64-linux-gnu/libgcc_s.so.1 7f2e80b5c000-7f2e80b5d000 rw-p 00015000 08:01 7092 /lib/x86_64-linux-gnu/libgcc_s.so.1 7f2e80b5d000-7f2e80c65000 r-xp 00000000 08:01 7124 /lib/x86_64-linux-gnu/libm-2.23.so 7f2e80c65000-7f2e80e64000 ---p 00108000 08:01 7124 /lib/x86_64-linux-gnu/libm-2.23.so 7f2e80e64000-7f2e80e65000 r--p 00107000 08:01 7124 /lib/x86_64-linux-gnu/libm-2.23.so 7f2e80e65000-7f2e80e66000 rw-p 00108000 08:01 7124 /lib/x86_64-linux-gnu/libm-2.23.so 7f2e80e66000-7f2e80fd8000 r-xp 00000000 08:01 134315 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21 7f2e80fd8000-7f2e811d8000 ---p 00172000 08:01 134315 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21 7f2e811d8000-7f2e811e2000 r--p 00172000 08:01 134315 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21 7f2e811e2000-7f2e811e4000 rw-p 0017c000 08:01 134315 /usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21 7f2e811e4000-7f2e811e8000 rw-p 00000000 00:00 0 7f2e811e8000-7f2e811ef000 r-xp 00000000 08:01 7208 /lib/x86_64-linux-gnu/librt-2.23.so 7f2e811ef000-7f2e813ee000 ---p 00007000 08:01 7208 /lib/x86_64-linux-gnu/librt-2.23.so 7f2e813ee000-7f2e813ef000 r--p 00006000 08:01 7208 /lib/x86_64-linux-gnu/librt-2.23.so 7f2e813ef000-7f2e813f0000 rw-p 00007000 08:01 7208 /lib/x86_64-linux-gnu/librt-2.23.so 7f2e813f0000-7f2e81408000 r-xp 00000000 08:01 7200 /lib/x86_64-linux-gnu/libpthread-2.23.so 7f2e81408000-7f2e81607000 ---p 00018000 08:01 7200 /lib/x86_64-linux-gnu/libpthread-2.23.so 7f2e81607000-7f2e81608000 r--p 00017000 08:01 7200 /lib/x86_64-linux-gnu/libpthread-2.23.so 7f2e81608000-7f2e81609000 rw-p 00018000 08:01 7200 /lib/x86_64-linux-gnu/libpthread-2.23.so 7f2e81609000-7f2e8160d000 rw-p 00000000 00:00 0 7f2e8160d000-7f2e81626000 r-xp 00000000 08:01 7245 /lib/x86_64-linux-gnu/libz.so.1.2.8 7f2e81626000-7f2e81825000 ---p 00019000 08:01 7245 /lib/x86_64-linux-gnu/libz.so.1.2.8 7f2e81825000-7f2e81826000 r--p 00018000 08:01 7245 /lib/x86_64-linux-gnu/libz.so.1.2.8 7f2e81826000-7f2e81827000 rw-p 00019000 08:01 7245 /lib/x86_64-linux-gnu/libz.so.1.2.8 7f2e81827000-7f2e8184d000 r-xp 00000000 08:01 7026 /lib/x86_64-linux-gnu/ld-2.23.so 7f2e81937000-7f2e81a33000 rw-p 00000000 00:00 0 7f2e81a42000-7f2e81a43000 rw-p 00000000 00:00 0 7f2e81a43000-7f2e81a4a000 r--s 00000000 08:01 267771 /usr/lib/x86_64-linux-gnu/gconv/gconv-modules.cache 7f2e81a4a000-7f2e81a4c000 rw-p 00000000 00:00 0 7f2e81a4c000-7f2e81a4d000 r--p 00025000 08:01 7026 /lib/x86_64-linux-gnu/ld-2.23.so 7f2e81a4d000-7f2e81a4e000 rw-p 00026000 08:01 7026 /lib/x86_64-linux-gnu/ld-2.23.so 7f2e81a4e000-7f2e81a4f000 rw-p 00000000 00:00 0 7ffc78071000-7ffc78092000 rw-p 00000000 00:00 0 [stack] 7ffc78160000-7ffc78162000 r--p 00000000 00:00 0 [vvar] 7ffc78162000-7ffc78164000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] Aborted (core dumped) |
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