XTamden error | aschwin.vanderwoude | 2008-05-20 05:01 | |||||||||||||||||||||||||||
Status: Closed | |||||||||||||||||||||||||||||
Hi, I got the following error when hitting the "X!Tandem peptide search" button. This is on Labkey/CPAS 8.1 and the xtandem (/tandem_2007-07-01_2) downloaded from the labkey website, and on a Debian Linux box. Any clues? -Aschwin --------- An unexpected error occurred [Show more details] java.lang.NullPointerException at org.labkey.jsp.compiled.org.labkey.ms2.pipeline.search_jsp._jspService(search_jsp.java:187) at org.labkey.api.view.JspView.renderView(JspView.java:103) at org.labkey.api.view.WebPartView.renderInternal(WebPartView.java:171) at org.labkey.api.view.HttpView.render(HttpView.java:131) at org.labkey.api.view.HttpView.render(HttpView.java:113) at org.labkey.api.view.HttpView.include(HttpView.java:525) at org.labkey.jsp.compiled.org.labkey.api.view.template.CommonTemplate_jsp._jspService(CommonTemplate_jsp.java:173) at org.labkey.api.view.JspView.renderView(JspView.java:103) at org.labkey.api.view.WebPartView.renderInternal(WebPartView.java:171) at org.labkey.api.view.HttpView.render(HttpView.java:131) at org.labkey.api.view.HttpView.render(HttpView.java:113) at org.labkey.api.action.SpringActionController.renderInTemplate(SpringActionController.java:365) at org.labkey.api.action.SpringActionController.handleRequest(SpringActionController.java:293) at org.labkey.api.view.ViewServlet.dispatchActionController(ViewServlet.java:315) at org.labkey.api.view.ViewServlet._dispatchActionURL(ViewServlet.java:152) at org.labkey.api.view.ViewServlet.service(ViewServlet.java:128) at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.api.data.TransactionFilter.doFilter(TransactionFilter.java:36) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.core.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:124) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.api.module.ModuleLoader.doFilter(ModuleLoader.java:899) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.api.security.AuthFilter.doFilter(AuthFilter.java:94) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:199) at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:282) at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:767) at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:697) at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:889) at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) at java.lang.Thread.run(Thread.java:595) request attributes LABKEY.action = searchXTandem org.springframework.web.servlet.DispatcherServlet.CONTEXT = org.springframework.web.context.support.XmlWebApplicationContext@1637d45: display name [MS2 WebApplicationContext]; startup date [Tue May 20 14:56:52 EEST 2008]; parent: org.springframework.web.context.support.XmlWebApplicationContext@32bd65 form = org.labkey.ms2.pipeline.MS2SearchForm@dc135d org.springframework.validation.BindingResult.form = org.springframework.validation.BeanPropertyBindingResult: 0 errors LABKEY.container = /Playground WebPartView.frame = DIV LABKEY.OriginalURL = http://cpas-proteomics.btk.fi/ms2-pipeline/Playground/searchXTandem.view? LABKEY.StartTime = 1211284646578 LABKEY.RequestURL = /ms2-pipeline/Playground/searchXTandem.view? LABKEY.controller = ms2-pipeline core schema database configuration Server URL jdbc:postgresql://localhost/labkey Product Name PostgreSQL Product Version 8.1.11 Driver Name PostgreSQL Native Driver Driver Version PostgreSQL 8.3 JDBC3 with SSL (build 603) |
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