Hi,

When trying a mascot search with some files, I get the following in the error.log. The state of the job changed to ERROR but it does seem to do something still as the log does continue to grow after the error. I posted the start and end of the log.

Any ideas if this is a misconfiguration or such? I didn't see this in the 8.1 when I was testing it.
Or would this be a bug?

-Aschwin

### Details

   Labkey 8.2
   Debian Etch Linux
   Tomcat 5.5.20
   Apache 2.2.3
   Mascot 2.2.0

#### error.log ####
11 Aug 2008 16:04:13,968 INFO : mascot client output
11 Aug 2008 16:04:13,968 INFO : =======================================
11 Aug 2008 16:04:13,977 ERROR: Exception class java.net.MalformedURLException connect(mascot2-proteomics.btk.fi/cgi,<null>,,)=mascot2-proteomics.btk.fi/cgi/login.pl?onerrdisplay=nothing&action=issecuritydisabled&display=nothing
11 Aug 2008 16:04:14,523 INFO : ../bin/ms-searchcontrol.exe - Version 2.2.0 - Server: Apache/2.2.3 (Debian) PHP/5.2.0-8+etch11
11 Aug 2008 16:04:15,038 INFO : Creating Mascot session...
11 Aug 2008 16:04:15,211 INFO : Mascot session#all_secdisabledsession started.
11 Aug 2008 16:04:15,211 INFO : Creating Mascot search task...
11 Aug 2008 16:04:15,406 INFO : Mascot search task#121845985501 created with 'nph-mascot.exe'.
11 Aug 2008 16:04:15,406 INFO : Submitting search to Mascot server...
11 Aug 2008 16:04:15,435 INFO : Submitting query file, size=52443192
11 Aug 2008 16:04:37,394 INFO : Mascot search task status: query upload completed
.....
.....
11 Aug 2008 16:10:39,158 INFO : recorded static mods:
11 Aug 2008 16:10:39,159 INFO : aa: U mass: 150.038 index: 0 static
11 Aug 2008 16:10:39,159 INFO :
11 Aug 2008 16:10:39,159 INFO : recorded static mods:
11 Aug 2008 16:10:39,159 INFO : aa: X mass: 111 index: 0 static
11 Aug 2008 16:10:39,159 INFO :
11 Aug 2008 16:10:39,159 INFO : recorded static mods:
11 Aug 2008 16:10:39,159 INFO : aa: Z mass: 128.622 index: 0 static
11 Aug 2008 16:10:39,161 INFO :
11 Aug 2008 16:10:39,161 INFO : Sample enzyme has not been specified, "Trypsin" from .dat file assumed
11 Aug 2008 16:10:39,161 INFO : trypsin : cut(KR) nocuts(P) sense(C)
11 Aug 2008 16:10:39,219 INFO : prev_aa and next_aa have already been read from .dat file.
11 Aug 2008 16:10:39,219 INFO : Completing 5239 protein descriptions by parsing through the database...
11 Aug 2008 16:10:39,219 INFO : Replacing 5239 protein id with full ids by parsing through the database...
11 Aug 2008 16:10:41,516 INFO : searching /opt/labkeypipeline/databases/mascot/AVE-HMN-Sp39Tr56/UniProt_20080722_SPROT_56.0-Trembl_39.0.fasta.....5%.....10%.....15%.....20%.....30%.....35%.....40%.....45%.....50%.....60%.....65%.....70%.....75%.....80%.....90%.....95%...done
11 Aug 2008 16:10:41,516 INFO : Skipping .dta, .out and .tgz generation
####