I'm getting an mz/mz results loading error using Mascot with the cluster pipeline.
It seems to be related to a Mascot2XML problem that had a fix posted about a year ago on this supprt board.
Manually looking in the pep.xml file I cannot find any weird charaters at the peptide_prev_aa attributes. The same search works fine with xtandem.
./Mascot2XML(TPP v3.3 SQUALL rev.1, Build 200711050856)
Thanks,
Bill
11 Dec 2007 11:02:15,925 INFO : Loading MS/MS results is 0% complete
11 Dec 2007 11:02:15,925 INFO : Loading MS/MS results is 1% complete
11 Dec 2007 11:02:15,925 ERROR: MS2 data upload failed
org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1548)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1316)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:191)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:452)
at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:351)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:344)
at org.apache.tomcat.dbcp.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:168)
at org.labkey.api.data.ConnectionWrapper$StatementWrapper.execute(ConnectionWrapper.java:1063)
at org.labkey.ms2.PepXmlImporter.write(PepXmlImporter.java:455)
at org.labkey.ms2.PepXmlImporter.uploadRun(PepXmlImporter.java:122)
at org.labkey.ms2.MS2Importer.upload(MS2Importer.java:189)
at org.labkey.ms2.MS2Manager.uploadRun(MS2Manager.java:411)
at org.labkey.ms2.MS2Manager.addRun(MS2Manager.java:402)
at org.labkey.ms2.PepXmlExperimentDataHandler.importFile(PepXmlExperimentDataHandler.java:101)
at org.labkey.experiment.XarReader.loadDataFile(XarReader.java:1065)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:302)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:105)
at org.labkey.experiment.api.ExperimentServiceImpl.loadExperiment(ExperimentServiceImpl.java:493)
at org.labkey.api.exp.ExperimentPipelineJob.loadExperiment(ExperimentPipelineJob.java:90)
at org.labkey.ms2.pipeline.MascotPipelineJob.upload(MascotPipelineJob.java:181)
at org.labkey.ms2.pipeline.AbstractMS2SearchPipelineJob.run(AbstractMS2SearchPipelineJob.java:274)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
11 Dec 2007 11:02:15,941 FATAL: Exception during load
org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.labkey.experiment.XarReader.loadDataFile(XarReader.java:1069)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:302)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:105)
at org.labkey.experiment.api.ExperimentServiceImpl.loadExperiment(ExperimentServiceImpl.java:493)
at org.labkey.api.exp.ExperimentPipelineJob.loadExperiment(ExperimentPipelineJob.java:90)
at org.labkey.ms2.pipeline.MascotPipelineJob.upload(MascotPipelineJob.java:181)
at org.labkey.ms2.pipeline.AbstractMS2SearchPipelineJob.run(AbstractMS2SearchPipelineJob.java:274)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: org.labkey.api.exp.ExperimentException: org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.labkey.ms2.PepXmlExperimentDataHandler.importFile(PepXmlExperimentDataHandler.java:115)
at org.labkey.experiment.XarReader.loadDataFile(XarReader.java:1065)
... 14 more
Caused by: org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1548)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1316)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:191)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:452)
at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:351)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:344)
at org.apache.tomcat.dbcp.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:168)
at org.labkey.api.data.ConnectionWrapper$StatementWrapper.execute(ConnectionWrapper.java:1063)
at org.labkey.ms2.PepXmlImporter.write(PepXmlImporter.java:455)
at org.labkey.ms2.PepXmlImporter.uploadRun(PepXmlImporter.java:122)
at org.labkey.ms2.MS2Importer.upload(MS2Importer.java:189)
at org.labkey.ms2.MS2Manager.uploadRun(MS2Manager.java:411)
at org.labkey.ms2.MS2Manager.addRun(MS2Manager.java:402)
at org.labkey.ms2.PepXmlExperimentDataHandler.importFile(PepXmlExperimentDataHandler.java:101)
... 15 more
11 Dec 2007 11:02:15,941 FATAL: Upload FAILED
11 Dec 2007 11:02:58,394 INFO : Mascot search for ICAT_SHAO_MITO_05.mzXML
11 Dec 2007 11:02:58,394 INFO : =======================================
11 Dec 2007 11:03:27,034 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.ConvertToMgf:2' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,034 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.MascotSearch:2' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,050 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.ConvertToPepXml:2' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,050 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.XInteract.PeptideProphet:2' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,066 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.XInteract.ProteinProphet:2' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,066 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.MascotXpressAnalysis:1' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,066 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.XpressQuantitation:1' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,081 INFO : Existing protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MarkRunOutput:2' is referenced by other experiment runs, so it cannot be updated
11 Dec 2007 11:03:27,081 INFO : Finished loading Experiment with LSID 'urn:lsid:uky.edu:Experiment.Folder-11:DefaultExperiment'
11 Dec 2007 11:03:27,097 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.ConvertToMgf:2'
11 Dec 2007 11:03:27,097 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.MascotSearch:2'
11 Dec 2007 11:03:27,112 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.ConvertToPepXml:2'
11 Dec 2007 11:03:27,128 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.XInteract.PeptideProphet:2'
11 Dec 2007 11:03:27,128 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.XInteract.ProteinProphet:2'
11 Dec 2007 11:03:27,144 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.MascotXpressAnalysis:1'
11 Dec 2007 11:03:27,144 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MS2.XpressQuantitation:1'
11 Dec 2007 11:03:27,159 INFO : Finished loading Protocol with LSID 'urn:lsid:uky.edu:Protocol.Folder-11:MarkRunOutput:2'
11 Dec 2007 11:03:27,253 INFO : Found an existing entry for Data LSID urn:lsid:uky.edu:Data.Folder-11-Xar-47c2a24a-7e87-102a-8197-43d44cb8d1ca:..%5C..%5CICAT_SHAO_MITO_05.mzXML, not reloading its values from scratch
11 Dec 2007 11:03:27,253 INFO : Finished loading Data with LSID 'urn:lsid:uky.edu:Data.Folder-11-Xar-47c2a24a-7e87-102a-8197-43d44cb8d1ca:..%5C..%5CICAT_SHAO_MITO_05.mzXML'
11 Dec 2007 11:03:27,253 INFO : Found an existing entry for Data LSID urn:lsid:uky.edu:Data.Folder-11-Xar-00f0a100-897b-102a-b027-43d44cb80b37:mascot.xml, not reloading its values from scratch
11 Dec 2007 11:03:27,269 INFO : Finished loading Data with LSID 'urn:lsid:uky.edu:Data.Folder-11-Xar-00f0a100-897b-102a-b027-43d44cb80b37:mascot.xml'
11 Dec 2007 11:03:27,269 INFO : Found an existing entry for Data LSID urn:lsid:uky.edu:Data.Folder-11-Xar-00f0a0df-897b-102a-b027-43d44cb80b37:..%5C..%5C..%5C..%5C..%5C..%5Cdatabases%5Cmascot%5CSprot%5Csprot_20071022.fasta, not reloading its values from scratch
11 Dec 2007 11:03:27,269 INFO : Finished loading Data with LSID 'urn:lsid:uky.edu:Data.Folder-11-Xar-00f0a0df-897b-102a-b027-43d44cb80b37:..%5C..%5C..%5C..%5C..%5C..%5Cdatabases%5Cmascot%5CSprot%5Csprot_20071022.fasta'
11 Dec 2007 11:03:27,269 INFO : Experiment run with LSID'urn:lsid:uky.edu:ExperimentRun.Folder-11:MS2-AD_MITO%2Ffractions%2Fmascot%2FmascotTest3%2FICAT_SHAO_MITO_05' already exists, it will NOT be reloaded.
11 Dec 2007 11:03:27,300 INFO : Trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/ICAT_SHAO_MITO_05.mzXML into the system
11 Dec 2007 11:03:27,316 INFO : No ExperimentDataHandler registered for data file file:/Z:/projects/UPS/AD_MITO/fractions/ICAT_SHAO_MITO_05.mzXML, no special loading will be done on this file.
11 Dec 2007 11:03:27,316 INFO : Finished trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/ICAT_SHAO_MITO_05.mzXML into the system
11 Dec 2007 11:03:27,331 INFO : Trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/ICAT_SHAO_MITO_05.mzXML into the system
11 Dec 2007 11:03:27,331 INFO : No ExperimentDataHandler registered for data file file:/Z:/projects/UPS/AD_MITO/fractions/ICAT_SHAO_MITO_05.mzXML, no special loading will be done on this file.
11 Dec 2007 11:03:27,331 INFO : Finished trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/ICAT_SHAO_MITO_05.mzXML into the system
11 Dec 2007 11:03:27,331 INFO : Trying to load data file file:/Z:/databases/mascot/Sprot/sprot_20071022.fasta into the system
11 Dec 2007 11:03:27,331 WARN : Unable to find the data file Z:\databases\mascot\Sprot\sprot_20071022.fasta on disk.
11 Dec 2007 11:03:27,331 INFO : Trying to load data file file:/Z:/databases/mascot/Sprot/sprot_20071022.fasta into the system
11 Dec 2007 11:03:27,347 WARN : Unable to find the data file Z:\databases\mascot\Sprot\sprot_20071022.fasta on disk.
11 Dec 2007 11:03:27,347 INFO : Trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/mascot.xml into the system
11 Dec 2007 11:03:27,347 INFO : No ExperimentDataHandler registered for data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/mascot.xml, no special loading will be done on this file.
11 Dec 2007 11:03:27,362 INFO : Finished trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/mascot.xml into the system
11 Dec 2007 11:03:27,362 INFO : Trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/mascot.xml into the system
11 Dec 2007 11:03:27,362 INFO : No ExperimentDataHandler registered for data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/mascot.xml, no special loading will be done on this file.
11 Dec 2007 11:03:27,362 INFO : Finished trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/mascot.xml into the system
11 Dec 2007 11:03:27,362 INFO : Trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/ICAT_SHAO_MITO_05.mgf into the system
11 Dec 2007 11:03:27,378 INFO : No ExperimentDataHandler registered for data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/ICAT_SHAO_MITO_05.mgf, no special loading will be done on this file.
11 Dec 2007 11:03:27,378 INFO : Finished trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/ICAT_SHAO_MITO_05.mgf into the system
11 Dec 2007 11:03:27,378 INFO : Trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/ICAT_SHAO_MITO_05.dat into the system
11 Dec 2007 11:03:27,394 INFO : No ExperimentDataHandler registered for data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/ICAT_SHAO_MITO_05.dat, no special loading will be done on this file.
11 Dec 2007 11:03:27,394 INFO : Finished trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/ICAT_SHAO_MITO_05.dat into the system
11 Dec 2007 11:03:27,394 INFO : Trying to load data file file:/Z:/projects/UPS/AD_MITO/fractions/mascot/mascotTest3/ICAT_SHAO_MITO_05.pep.xml into the system
11 Dec 2007 11:03:27,441 INFO : Restarting upload from "ICAT_SHAO_MITO_05.pep.xml"
11 Dec 2007 11:03:27,441 INFO : Clearing out existing MS2 data for ICAT_SHAO_MITO_05.pep.xml
11 Dec 2007 11:03:27,503 INFO : Finished clearing out existing MS2 data for ICAT_SHAO_MITO_05.pep.xml
11 Dec 2007 11:03:27,550 INFO : Loading FASTA file
11 Dec 2007 11:03:35,316 INFO : FASTA file "z:/databases/Sprot" has already been loaded
11 Dec 2007 11:03:35,331 INFO : Loading MS/MS results is 0% complete
11 Dec 2007 11:03:35,347 INFO : Loading MS/MS results is 1% complete
11 Dec 2007 11:03:35,347 ERROR: MS2 data upload failed
org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1548)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1316)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:191)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:452)
at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:351)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:344)
at org.apache.tomcat.dbcp.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:168)
at org.labkey.api.data.ConnectionWrapper$StatementWrapper.execute(ConnectionWrapper.java:1063)
at org.labkey.ms2.PepXmlImporter.write(PepXmlImporter.java:455)
at org.labkey.ms2.PepXmlImporter.uploadRun(PepXmlImporter.java:122)
at org.labkey.ms2.MS2Importer.upload(MS2Importer.java:189)
at org.labkey.ms2.MS2Manager.uploadRun(MS2Manager.java:411)
at org.labkey.ms2.MS2Manager.addRun(MS2Manager.java:402)
at org.labkey.ms2.PepXmlExperimentDataHandler.importFile(PepXmlExperimentDataHandler.java:101)
at org.labkey.experiment.XarReader.loadDataFile(XarReader.java:1065)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:302)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:105)
at org.labkey.experiment.api.ExperimentServiceImpl.loadExperiment(ExperimentServiceImpl.java:493)
at org.labkey.api.exp.ExperimentPipelineJob.loadExperiment(ExperimentPipelineJob.java:90)
at org.labkey.ms2.pipeline.MascotPipelineJob.upload(MascotPipelineJob.java:181)
at org.labkey.ms2.pipeline.AbstractMS2SearchPipelineJob.run(AbstractMS2SearchPipelineJob.java:274)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
11 Dec 2007 11:03:35,362 FATAL: Exception during load
org.labkey.api.exp.XarFormatException: org.labkey.api.exp.ExperimentException: org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.labkey.experiment.XarReader.loadDataFile(XarReader.java:1069)
at org.labkey.experiment.XarReader.loadDoc(XarReader.java:302)
at org.labkey.experiment.XarReader.parseAndLoad(XarReader.java:105)
at org.labkey.experiment.api.ExperimentServiceImpl.loadExperiment(ExperimentServiceImpl.java:493)
at org.labkey.api.exp.ExperimentPipelineJob.loadExperiment(ExperimentPipelineJob.java:90)
at org.labkey.ms2.pipeline.MascotPipelineJob.upload(MascotPipelineJob.java:181)
at org.labkey.ms2.pipeline.AbstractMS2SearchPipelineJob.run(AbstractMS2SearchPipelineJob.java:274)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: org.labkey.api.exp.ExperimentException: org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.labkey.ms2.PepXmlExperimentDataHandler.importFile(PepXmlExperimentDataHandler.java:115)
at org.labkey.experiment.XarReader.loadDataFile(XarReader.java:1065)
... 14 more
Caused by: org.postgresql.util.PSQLException: ERROR: null value in column "prevaa" violates not-null constraint
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1548)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1316)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:191)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:452)
at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:351)
at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:344)
at org.apache.tomcat.dbcp.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:168)
at org.labkey.api.data.ConnectionWrapper$StatementWrapper.execute(ConnectionWrapper.java:1063)
at org.labkey.ms2.PepXmlImporter.write(PepXmlImporter.java:455)
at org.labkey.ms2.PepXmlImporter.uploadRun(PepXmlImporter.java:122)
at org.labkey.ms2.MS2Importer.upload(MS2Importer.java:189)
at org.labkey.ms2.MS2Manager.uploadRun(MS2Manager.java:411)
at org.labkey.ms2.MS2Manager.addRun(MS2Manager.java:402)
at org.labkey.ms2.PepXmlExperimentDataHandler.importFile(PepXmlExperimentDataHandler.java:101)
... 15 more
11 Dec 2007 11:03:35,362 FATAL: Upload FAILED |