Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.65 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Oct 9 2015 08:36:58 UTC Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.65.0 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 2.6.32-358.el6.x86_64 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /scicomp/home/ytm4/jdk1.8.0_65/jre Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_65-b17 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/scicomp/home/ytm4/apache-tomcat-7.0.65/conf/logging.properties Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms128m Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx2048m Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:-HeapDumpOnOutOfMemoryError Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/scicomp/home/ytm4/apache-tomcat-7.0.65/endorsed Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/scicomp/home/ytm4/apache-tomcat-7.0.65/temp Oct 30, 2015 10:52:59 AM org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib Oct 30, 2015 10:52:59 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Oct 30, 2015 10:52:59 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 574 ms Oct 30, 2015 10:52:59 AM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Oct 30, 2015 10:52:59 AM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.65 Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /scicomp/home/ytm4/apache-tomcat-7.0.65/conf/Catalina/pddngs-dev-01.biotech.cdc.gov/labkey.xml Oct 30, 2015 10:52:59 AM org.apache.catalina.startup.SetContextPropertiesRule begin WARNING: [SetContextPropertiesRule]{Context} Setting property 'debug' to '0' did not find a matching property. Oct 30, 2015 10:52:59 AM org.apache.tomcat.util.digester.SetPropertiesRule begin WARNING: [SetPropertiesRule]{Context/Loader} Setting property 'useSystemClassLoaderAsParent' to 'false' did not find a matching property. Oct 30, 2015 10:52:59 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: WARNING: could not find the list of web app files at /scicomp/home/ytm4/LabKey15.2-39349.20-bin/WEB-INF/apiFiles.list. Automatic cleanup of the web app directory will not occur. Oct 30, 2015 10:52:59 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module announcements.module. Oct 30, 2015 10:53:00 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module audit.module. Oct 30, 2015 10:53:01 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module authentication.module. Oct 30, 2015 10:53:01 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module bigiron.module. Oct 30, 2015 10:53:02 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module core.module. Oct 30, 2015 10:53:04 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module dataintegration.module. Oct 30, 2015 10:53:04 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module elisa.module. Oct 30, 2015 10:53:05 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module elispotassay.module. Oct 30, 2015 10:53:05 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module experiment.module. Oct 30, 2015 10:53:07 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module fcsexpress.module. Oct 30, 2015 10:53:07 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module filecontent.module. Oct 30, 2015 10:53:09 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module flow.module. Oct 30, 2015 10:53:11 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module freezerpro.module. Oct 30, 2015 10:53:11 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module issues.module. Oct 30, 2015 10:53:11 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Extracting the module list.module. Oct 30, 2015 10:53:13 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module luminex.module. Oct 30, 2015 10:53:16 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module microarray.module. Oct 30, 2015 10:53:18 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module ms1.module. Oct 30, 2015 10:53:19 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module ms2.module. Oct 30, 2015 10:53:23 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module nab.module. Oct 30, 2015 10:53:24 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module pipeline.module. Oct 30, 2015 10:53:32 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module query.module. Oct 30, 2015 10:53:35 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module search.module. Oct 30, 2015 10:53:36 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module study.module. Oct 30, 2015 10:53:40 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module survey.module. Oct 30, 2015 10:53:41 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module targetedms.module. Oct 30, 2015 10:53:43 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module visualization.module. Oct 30, 2015 10:53:44 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Extracting the module wiki.module. Oct 30, 2015 10:53:45 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Deploying resources from exploded modules to web app directory... Oct 30, 2015 10:54:25 AM sun.reflect.GeneratedMethodAccessor17 invoke INFO: Module extraction and deployment complete. Oct 30, 2015 10:54:29 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:54:29 AM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /scicomp/home/ytm4/apache-tomcat-7.0.65/conf/Catalina/pddngs-dev-01.biotech.cdc.gov/labkey.xml has finished in 89,946 ms Oct 30, 2015 10:54:29 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/ROOT Oct 30, 2015 10:54:29 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:54:29 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/ROOT has finished in 120 ms Oct 30, 2015 10:54:29 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/docs Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/docs has finished in 113 ms Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/examples Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:54:30 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() Oct 30, 2015 10:54:30 AM org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() Oct 30, 2015 10:54:30 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: attributeAdded('org.apache.jasper.compiler.TldLocationsCache', 'org.apache.jasper.compiler.TldLocationsCache@7af58584') Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/examples has finished in 384 ms Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/host-manager Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/host-manager has finished in 130 ms Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/manager Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/manager has finished in 130 ms Oct 30, 2015 10:54:30 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Oct 30, 2015 10:54:30 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Oct 30, 2015 10:54:30 AM org.apache.catalina.startup.Catalina start INFO: Server startup in 90906 ms Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.65 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Oct 9 2015 08:36:58 UTC Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.65.0 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 2.6.32-573.7.1.el6.x86_64 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /scicomp/home/ytm4/jdk1.8.0_65/jre Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_65-b17 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/scicomp/home/ytm4/apache-tomcat-7.0.65/conf/logging.properties Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms128m Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx2048m Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:-HeapDumpOnOutOfMemoryError Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/scicomp/home/ytm4/apache-tomcat-7.0.65/endorsed Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/scicomp/home/ytm4/apache-tomcat-7.0.65 Oct 30, 2015 10:58:15 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/scicomp/home/ytm4/apache-tomcat-7.0.65/temp Oct 30, 2015 10:58:15 AM org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib Oct 30, 2015 10:58:16 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Oct 30, 2015 10:58:16 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Oct 30, 2015 10:58:16 AM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 851 ms Oct 30, 2015 10:58:16 AM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Oct 30, 2015 10:58:16 AM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.65 Oct 30, 2015 10:58:16 AM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /scicomp/home/ytm4/apache-tomcat-7.0.65/conf/Catalina/pddngs-dev-01.biotech.cdc.gov/labkey.xml Oct 30, 2015 10:58:16 AM org.apache.catalina.startup.SetContextPropertiesRule begin WARNING: [SetContextPropertiesRule]{Context} Setting property 'debug' to '0' did not find a matching property. Oct 30, 2015 10:58:16 AM org.apache.tomcat.util.digester.SetPropertiesRule begin WARNING: [SetPropertiesRule]{Context/Loader} Setting property 'useSystemClassLoaderAsParent' to 'false' did not find a matching property. Oct 30, 2015 10:58:16 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: WARNING: could not find the list of web app files at /scicomp/home/ytm4/LabKey15.2-39349.20-bin/WEB-INF/apiFiles.list. Automatic cleanup of the web app directory will not occur. Oct 30, 2015 10:58:16 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Deploying resources from exploded modules to web app directory... Oct 30, 2015 10:58:29 AM sun.reflect.NativeMethodAccessorImpl invoke0 INFO: Module extraction and deployment complete. Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /scicomp/home/ytm4/apache-tomcat-7.0.65/conf/Catalina/pddngs-dev-01.biotech.cdc.gov/labkey.xml has finished in 21,061 ms Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/ROOT Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/ROOT has finished in 224 ms Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/docs Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/docs has finished in 166 ms Oct 30, 2015 10:58:37 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/examples Oct 30, 2015 10:58:38 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:58:38 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: contextInitialized() Oct 30, 2015 10:58:38 AM org.apache.catalina.core.ApplicationContext log INFO: SessionListener: contextInitialized() Oct 30, 2015 10:58:38 AM org.apache.catalina.core.ApplicationContext log INFO: ContextListener: attributeAdded('org.apache.jasper.compiler.TldLocationsCache', 'org.apache.jasper.compiler.TldLocationsCache@40c57442') Oct 30, 2015 10:58:38 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/examples has finished in 1,075 ms Oct 30, 2015 10:58:38 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/host-manager Oct 30, 2015 10:58:38 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:58:38 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/host-manager has finished in 222 ms Oct 30, 2015 10:58:38 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/manager Oct 30, 2015 10:58:39 AM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Oct 30, 2015 10:58:39 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /scicomp/home/ytm4/apache-tomcat-7.0.65/webapps/manager has finished in 187 ms Oct 30, 2015 10:58:39 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Oct 30, 2015 10:58:39 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Oct 30, 2015 10:58:39 AM org.apache.catalina.startup.Catalina start INFO: Server startup in 23074 ms Oct 30, 2015 10:58:39 AM org.apache.tomcat.util.http.Cookies processCookieHeader INFO: Cookies: Invalid cookie. Value not a token or quoted value Note: further occurrences of Cookie errors will be logged at DEBUG level.