(1) Search of assay contant data (2) Hierarchy concept | mbrusnia | 2015-07-22 16:35 | |||||||||||||||||||||||||||||||
Status: Closed | |||||||||||||||||||||||||||||||||
(1) Search is not working for me. https://www.labkey.org/wiki/home/Documentation/page.view?name=luceneSearch I used the above document to search to take out all assay runs and batches that contains a string “OTD*”. I checked all categories and scopes to make sure it will return the information but it wasn’t. Could you tell me why my search is not returning obvious data? (2) Hierarchy concept In our view, Batch can have multi runs. However, after select a batch in view batches, it shows the run file. When I use “Import Data” under “view runs”, It still creates a new batch and put the new imported file as one run associated with a new batch. I can’t find a document how to tide multi runs to a given batch. I also have used select batch -> import data -> "save and import another run" The file has a new entry and the file name is also not overlap with any other run I have already uploaded. However, I got the following error that was not making sense for me 500: Unexpected server error The same file was uploaded twice - all files must be unique rg.labkey.api.exp.ExperimentException: The same file was uploaded twice - all files must be unique at org.labkey.api.study.assay.AssayFileWriter.savePostedFiles(AssayFileWriter.java:192) at org.labkey.api.study.actions.AssayRunUploadForm.getAdditionalPostedFiles(AssayRunUploadForm.java:253) at org.labkey.api.study.actions.AssayRunUploadForm.getPropertyMapFromRequest(AssayRunUploadForm.java:130) at org.labkey.api.study.actions.AssayRunUploadForm.getRunProperties(AssayRunUploadForm.java:111) at org.labkey.api.study.actions.UploadWizardAction$RunStepHandler.validatePost(UploadWizardAction.java:682) at org.labkey.api.study.actions.UploadWizardAction$RunStepHandler.handleStep(UploadWizardAction.java:628) at org.labkey.api.study.actions.UploadWizardAction.getView(UploadWizardAction.java:169) at org.labkey.api.study.actions.UploadWizardAction.getView(UploadWizardAction.java:95) at org.labkey.api.action.SimpleViewAction.handleRequest(SimpleViewAction.java:80) at org.labkey.api.action.BaseViewAction.handleRequestInternal(BaseViewAction.java:179) at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153) at org.labkey.api.action.SpringActionController.handleRequest(SpringActionController.java:414) at org.labkey.api.module.DefaultModule.dispatch(DefaultModule.java:1032) at org.labkey.api.view.ViewServlet._service(ViewServlet.java:190) at org.labkey.api.view.ViewServlet.service(ViewServlet.java:124) at javax.servlet.http.HttpServlet.service(HttpServlet.java:731) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.labkey.api.data.TransactionFilter.doFilter(TransactionFilter.java:38) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.labkey.core.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:118) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.labkey.api.module.ModuleLoader.doFilter(ModuleLoader.java:1085) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.labkey.api.security.AuthFilter.doFilter(AuthFilter.java:182) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423) at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079) at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:318) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) at java.lang.Thread.run(Thread.java:745) request attributes LABKEY.OriginalURL = http://optides.fhcrc.org:8080/labkey/assay/Optides/uploadWizard.view?rowId=22&uploadStep=BATCH LABKEY.StartTime = 1437607929205 LABKEY.action = uploadWizard org.springframework.web.servlet.DispatcherServlet.CONTEXT = org.labkey.api.module.SpringModule$1@5975c4f: display name [Study WebApplicationContext]; startup date [Mon May 04 04:53:43 PDT 2015]; parent: org.springframework.web.context.support.XmlWebApplicationContext@5762e5ed LABKEY.controller = assay LABKEY.Counter = 0 X-LABKEY-CSRF = 3fea1251744a79902feea5443850b61b LABKEY.container = /Optides LABKEY.RequestURL = /labkey/assay/Optides/uploadWizard.view?rowId=22&uploadStep=BATCH LABKEY.OriginalURLHelper = /labkey/assay/Optides/uploadWizard.view?rowId=22&uploadStep=BATCH I would appreciate if you can help me how I can associate multi run to one batch file. |
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