Feb 10, 2016 4:31:06 AM org.apache.catalina.core.StandardServer await INFO: A valid shutdown command was received via the shutdown port. Stopping the Server instance. Feb 10, 2016 4:31:06 AM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Feb 10, 2016 4:41:27 AM org.apache.catalina.core.AprLifecycleListener init INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib Feb 10, 2016 4:41:28 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Feb 10, 2016 4:41:28 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Feb 10, 2016 4:41:28 AM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 678 ms Feb 10, 2016 4:41:28 AM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Feb 10, 2016 4:41:28 AM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.54 Feb 10, 2016 4:41:28 AM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat/Catalina/localhost/labkey.xml Feb 10, 2016 4:41:28 AM org.apache.catalina.loader.WebappLoader startInternal SEVERE: LifecycleException java.lang.ClassNotFoundException: org.labkey.bootstrap.LabkeyServerBootstrapClassLoader at java.net.URLClassLoader.findClass(URLClassLoader.java:381) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:264) at org.apache.catalina.loader.WebappLoader.createClassLoader(WebappLoader.java:721) at org.apache.catalina.loader.WebappLoader.startInternal(WebappLoader.java:582) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5332) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632) at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:672) at org.apache.catalina.startup.HostConfig$DeployDescriptor.run(HostConfig.java:1862) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Feb 10, 2016 4:41:28 AM org.apache.catalina.core.ContainerBase addChildInternal SEVERE: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/labkey]] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:154) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632) at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:672) at org.apache.catalina.startup.HostConfig$DeployDescriptor.run(HostConfig.java:1862) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.catalina.LifecycleException: Failed to start component [WebappLoader[/labkey]] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:154) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5332) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) ... 10 more Caused by: org.apache.catalina.LifecycleException: start: at org.apache.catalina.loader.WebappLoader.startInternal(WebappLoader.java:630) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) ... 12 more Caused by: java.lang.ClassNotFoundException: org.labkey.bootstrap.LabkeyServerBootstrapClassLoader at java.net.URLClassLoader.findClass(URLClassLoader.java:381) at java.lang.ClassLoader.loadClass(ClassLoader.java:424) at java.lang.ClassLoader.loadClass(ClassLoader.java:357) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:264) at org.apache.catalina.loader.WebappLoader.createClassLoader(WebappLoader.java:721) at org.apache.catalina.loader.WebappLoader.startInternal(WebappLoader.java:582) ... 13 more Feb 10, 2016 4:41:28 AM org.apache.catalina.startup.HostConfig deployDescriptor SEVERE: Error deploying configuration descriptor /etc/tomcat/Catalina/localhost/labkey.xml java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/labkey]] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:904) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632) at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:672) at org.apache.catalina.startup.HostConfig$DeployDescriptor.run(HostConfig.java:1862) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Feb 10, 2016 4:41:28 AM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat/Catalina/localhost/labkey.xml has finished in 215 ms Feb 10, 2016 4:41:28 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat/webapps/ROOT Feb 10, 2016 4:41:29 AM org.apache.catalina.util.SessionIdGenerator createSecureRandom INFO: Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [430] milliseconds. Feb 10, 2016 4:41:29 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat/webapps/ROOT has finished in 1,333 ms Feb 10, 2016 4:41:29 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Feb 10, 2016 4:41:29 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Feb 10, 2016 4:41:29 AM org.apache.catalina.startup.Catalina start INFO: Server startup in 1685 ms