Hello,

Are you referring to the GenotypeAssays module in /externalModules? If so, that's one of ours. Just to clarify, do you have a development instance going where you build from source locally, or do you just want to download the pre-built .module file for your server?

-Ben

Good Day Ben,

Thank you for your reply..I do not have a development instance going. I only have one instance of labkey which I installed from the Linux binaries...I would just like to download a pre-built module for my so this it can show up as an option in my Labkey under modules menu.

Thank You,
Che

Sure, which LK version are you using?

I am on Labkey Version LabKey15.2-39071.18. Thanks.

OK. I think the simplest is to download this archive:

http://teamcity.labkey.org/guestAuth/repository/download/LabkeyRelease152_Installers/268580:id/extra_modules/LabKey15.2-39349.20-ExtraModules.tar.gz

which will include more modules than you need. Within that archive, you will need GenotypeAssays.module, and also LDK.module and laboratory.module. Once copied to your server (in the /modules directory), restart and then you should be able to enable GenotypeAssays in your folder and then create instances of those assay(s).

Thank you .....Will follow the instructions and let you know how it goes.

Thanks,
Che

Works Great Thank you !!!

Hello,


The module shows up now, however I am trying to import the test data from the website gs_archive.lists.zip and it give me an error: Invalid list archive....is it possible that the test data was for an older version?

Thanks,
Che

Hi Che,

So was it from this page where you got the zip file from?

https://www.labkey.org/wiki/home/Documentation/page.view?name=genotypingSetup

It looks like it is out of date.

Give my version a try (see attached).

Regards,

Jon

Hi Che,

It's possible you figured this out on your own, but I think I misunderstood your the original question. There is a Genotyping module and GenotypeAssays module. The latter provides some assays designed to manage genetic data (SNPs, microsats, etc). The test data you're asking about goes with the former, so I assume this is what you were after. The link I sent probably contained that module too though. If next gen sequencing is what you're after, we actually have a similar module aimed at this (https://github.com/bbimber/discvr-seq/wiki), that's been in use for a while.

Best of luck,
Ben

This is great Thank you ....I actually have use for both....