04-Dec-2017 16:58:09.938 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.0.47 04-Dec-2017 16:58:09.949 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Sep 29 2017 13:46:41 UTC 04-Dec-2017 16:58:09.949 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.0.47.0 04-Dec-2017 16:58:09.950 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux 04-Dec-2017 16:58:09.950 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.10.0-40-generic 04-Dec-2017 16:58:09.950 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64 04-Dec-2017 16:58:09.951 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre 04-Dec-2017 16:58:09.951 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_151-8u151-b12-0ubuntu0.16.04.2-b12 04-Dec-2017 16:58:09.951 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation 04-Dec-2017 16:58:09.951 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /usr/local/apache-tomcat-8.0.47 04-Dec-2017 16:58:09.951 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /usr/local/apache-tomcat-8.0.47 04-Dec-2017 16:58:09.952 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/usr/local/tomcat/conf/logging.properties 04-Dec-2017 16:58:09.955 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager 04-Dec-2017 16:58:09.956 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms128m 04-Dec-2017 16:58:09.956 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx2048m 04-Dec-2017 16:58:09.956 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:-HeapDumpOnOutOfMemoryError 04-Dec-2017 16:58:09.959 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048 04-Dec-2017 16:58:09.960 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources 04-Dec-2017 16:58:09.961 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.endorsed.dirs=/usr/local/tomcat/endorsed 04-Dec-2017 16:58:09.962 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/usr/local/tomcat 04-Dec-2017 16:58:09.964 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/local/tomcat 04-Dec-2017 16:58:09.964 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/usr/local/tomcat/temp 04-Dec-2017 16:58:09.966 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib 04-Dec-2017 16:58:10.290 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-80"] 04-Dec-2017 16:58:10.404 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read 04-Dec-2017 16:58:10.428 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-443"] 04-Dec-2017 16:58:11.184 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read 04-Dec-2017 16:58:11.190 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"] 04-Dec-2017 16:58:11.197 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read 04-Dec-2017 16:58:11.201 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 2533 ms 04-Dec-2017 16:58:11.312 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina 04-Dec-2017 16:58:11.314 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.47 04-Dec-2017 16:58:11.366 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deploying configuration descriptor /usr/local/apache-tomcat-8.0.47/conf/Catalina/localhost/ROOT.xml 04-Dec-2017 16:58:11.964 INFO [localhost-startStop-1] sun.reflect.NativeMethodAccessorImpl.invoke0 WARNING: could not find the list of web app files at /usr/local/labkey/labkeywebapp/WEB-INF/apiFiles.list. Automatic cleanup of the web app directory will not occur. 04-Dec-2017 16:58:11.971 INFO [localhost-startStop-1] sun.reflect.NativeMethodAccessorImpl.invoke0 Deploying resources from exploded modules to web app directory... 04-Dec-2017 16:58:12.523 INFO [localhost-startStop-1] sun.reflect.NativeMethodAccessorImpl.invoke0 Module extraction and deployment complete. 04-Dec-2017 16:58:38.861 WARNING [localhost-startStop-1] org.apache.tomcat.dbcp.dbcp2.BasicDataSourceFactory.getObjectInstance Name = labkeyDataSource Property maxActive is not used in DBCP2, use maxTotal instead. maxTotal default value is 8. You have set value of "20" for "maxActive" property, which is being ignored. 04-Dec-2017 16:58:39.466 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. 04-Dec-2017 16:59:09.950 SEVERE [localhost-startStop-1] org.apache.jasper.EmbeddedServletOptions. The scratchDir you specified: /usr/local/apache-tomcat-8.0.47/work/Catalina/localhost/ROOT is unusable. 04-Dec-2017 16:59:10.019 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDescriptor Deployment of configuration descriptor /usr/local/apache-tomcat-8.0.47/conf/Catalina/localhost/ROOT.xml has finished in 58,651 ms 04-Dec-2017 16:59:10.026 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /usr/local/apache-tomcat-8.0.47/webapps/examples 04-Dec-2017 16:59:11.564 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. 04-Dec-2017 16:59:11.703 SEVERE [localhost-startStop-1] org.apache.jasper.EmbeddedServletOptions. The scratchDir you specified: /usr/local/apache-tomcat-8.0.47/work/Catalina/localhost/examples is unusable. 04-Dec-2017 16:59:11.722 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /usr/local/apache-tomcat-8.0.47/webapps/examples has finished in 1,695 ms 04-Dec-2017 16:59:11.722 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /usr/local/apache-tomcat-8.0.47/webapps/host-manager 04-Dec-2017 16:59:12.319 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. 04-Dec-2017 16:59:12.337 SEVERE [localhost-startStop-1] org.apache.jasper.EmbeddedServletOptions. The scratchDir you specified: /usr/local/apache-tomcat-8.0.47/work/Catalina/localhost/host-manager is unusable. 04-Dec-2017 16:59:12.339 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /usr/local/apache-tomcat-8.0.47/webapps/host-manager has finished in 617 ms 04-Dec-2017 16:59:12.340 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /usr/local/apache-tomcat-8.0.47/webapps/manager 04-Dec-2017 16:59:12.607 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. 04-Dec-2017 16:59:12.617 SEVERE [localhost-startStop-1] org.apache.jasper.EmbeddedServletOptions. The scratchDir you specified: /usr/local/apache-tomcat-8.0.47/work/Catalina/localhost/manager is unusable. 04-Dec-2017 16:59:12.621 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /usr/local/apache-tomcat-8.0.47/webapps/manager has finished in 281 ms 04-Dec-2017 16:59:12.621 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /usr/local/apache-tomcat-8.0.47/webapps/docs 04-Dec-2017 16:59:12.965 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. 04-Dec-2017 16:59:12.969 SEVERE [localhost-startStop-1] org.apache.jasper.EmbeddedServletOptions. The scratchDir you specified: /usr/local/apache-tomcat-8.0.47/work/Catalina/localhost/docs is unusable. 04-Dec-2017 16:59:12.971 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /usr/local/apache-tomcat-8.0.47/webapps/docs has finished in 349 ms 04-Dec-2017 16:59:13.009 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-80"] 04-Dec-2017 16:59:13.142 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-443"] 04-Dec-2017 16:59:13.191 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"] 04-Dec-2017 16:59:13.207 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 62004 ms