| CompControlPassFail | A compensation control passes if there are at least 1000 events in the ungated population, and the gated population is at least an amount dependent on the stain. |
| CompensationControls | The 'CompensationControls' table shows statistics and graphs of FCS files that were used to calculate a compensation matrix. |
| CompensationMatrices | The 'CompensationMatrices' table shows compensation matrices and their spill values. |
| demo | |
| DeviationFromMean | Ensures that for each FCS file, the following stats do not differ by more than 10% (of the average) from the average of the files for the same sample: Live frequency, CD4 frequency, CD8 frequency |
| FCSAnalyses | The 'FCSAnalyses' table shows statistics and graphs of FCS files. |
| FCSFiles | The 'FCSFiles' table shows FCS files and their keywords. |
| PassFail | Ensures that all FCS files for a given sample meet the following criteria: min 10000 CD4 and CD8 (5000 for Env, SEB, CMV), sebctrl >= 1.2%, negctrl <= .1%. Details link takes you to the "PassFailDetails" query. |
| PassFailDetails | Like the PassFail query, but has one row per FCS file. |
| Response | CD4 or CD8 positive response. Makes use of background specified in metadata. |
| Runs | The flow 'Runs' table shows experiment runs in the three steps of analysis: read Keywords, calculate Compensation, and perform Analysis. |
| StatisticDemo | |
| SubsetDemo | |
| Summary3Cytokine | Complete set of data for statistical analysies. Includes one row for each boolean gate. |