Work with MS2 Data: /Documentation/Archive/23.7

Work with MS2 Data

Documentation: Version 23.7

Work with MS2 Data

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The topics in this section cover managing, analyzing, and sharing high volumes of tandem mass spectrometry (MS2) data:

Search MS2 Data Via the Pipeline: Analyze MS2 data using pipeline protocols.

Set Up MS2 Search Engines: Select specific search engine.
Search and Process MS2 Data: Configure parameters.
Trigger MS2 Processing Automatically
Set Proteomics Search Tools Version

Related Topics

Discovery Proteomics Tutorial: Explore the basics using sample data in our tutorial.
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Pages

Documentation Home

Getting Started

Introduction to LabKey Server

Navigate the Server

Tutorial: Import Experimental / Assay Data

Tutorial: Assay Data Validation

Assay Administrator Guide

Assay User Guide

Assay Terminology

FluoroSpot Assay

Microarray: Expression Matrix

Mass Spectrometry

Discovery Proteomics

Discovery Proteomics Tutorial

Work with MS2 Data

Loading Public Protein Annotation Files

Using Custom Protein Annotations

Using ProteinProphet

Using Quantitation Tools

MaxQuant Module

Combine XTandem Results

NAb (Neutralizing Antibody) Assays

Assay Request Tracker

Experiment Framework

Record Lab Workflow

Panorama: Targeted Mass Spectrometry

Troubleshoot LabKey Server

LabKey Sample Manager

LabKey Biologics LIMS

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