Howdy Folks,

The implementation of R in 8.1 is amazing. Special thanks to Brian "Cpas" Connolly for the detailed Linux notes on your website (and for your help with the upgrade).
The R views created through spectral counting query work great, however when we try to run them through the Protein Prophet query we receive the following error:

An error occurred rendering this view, you may not have permission to view it

I tried :
open permissions on the folder/project
executing the scripts under an admin account

Double checked the R View Configuration and found

Script execution:    Batch mode.
Permissions: Admin
R is using the system temporary folder

The tomcat/labkey log showed something I think could be a part of it.
Its as if the R script runner is trying to run its method on an object (the R Report?) but instead is throwing a null pointer.
Maybe some object is not being instantiated?

I pasted the log info below.
If anyone has already encountered this let me know, what would be a good solution for this. Thanks everybody -Rich

[root@localhost logs]# tail -n 50 labkey.log

ERROR RScriptRunner 2008-05-07 10:58:48,537 http-8443-Processor17 : Error while rendering RReport
java.lang.NullPointerException
at org.labkey.api.data.CrosstabTableInfo.addCrosstabQuery(CrosstabTableInfo.java:223)
        at org.labkey.api.data.CrosstabTableInfo.getFromSQL(CrosstabTableInfo.java:477)
        at org.labkey.api.data.AbstractTableInfo.getFromSQL(AbstractTableInfo.java:86)
        at org.labkey.api.data.Table.getSelectSQL(Table.java:1213)
        at org.labkey.api.data.Table.getDisplaySelectSQL(Table.java:1250)
        at org.labkey.api.data.Table.selectForDisplay(Table.java:1476)
        at org.labkey.api.data.Table.selectForDisplay(Table.java:1457)
        at org.labkey.api.data.RenderContext.selectForDisplay(RenderContext.java:348)
        at org.labkey.api.data.RenderContext.getResultSet(RenderContext.java:230)
        at org.labkey.api.data.DataRegion.getResultSet(DataRegion.java:560)
        at org.labkey.api.data.DataRegion.getResultSet(DataRegion.java:555)
        at org.labkey.api.reports.report.RReport.generateResultSet(RReport.java:440)
        at org.labkey.api.reports.report.DefaultScriptRunner.createInputDataFile(DefaultScriptRunner.java:196)
        at org.labkey.api.reports.report.DefaultScriptRunner.runScript(DefaultScriptRunner.java:48)
        at org.labkey.api.reports.report.RReport.renderReport(RReport.java:185)
        at org.labkey.api.reports.report.view.RunRReportView.getTabView(RunRReportView.java:256)
        at org.labkey.api.view.TabStripView.renderInternal(TabStripView.java:28)
        at org.labkey.api.reports.report.view.RunReportView.renderInternal(RunReportView.java:38)
        at org.labkey.api.view.HttpView.renderInternal(HttpView.java:222)
        at org.labkey.api.view.HttpView.render(HttpView.java:131)
        at org.labkey.api.view.HttpView.render(HttpView.java:113)
        at org.labkey.api.view.HttpView.include(HttpView.java:525)
        at org.labkey.jsp.compiled.org.labkey.api.view.template.CommonTemplate_jsp._jspService(CommonTemplate_jsp.java:173)
        at org.labkey.api.view.JspView.renderView(JspView.java:103)
        at org.labkey.api.view.WebPartView.renderInternal(WebPartView.java:171)
        at org.labkey.api.view.HttpView.render(HttpView.java:131)
        at org.labkey.api.view.HttpView.render(HttpView.java:113)
        at org.labkey.api.action.SpringActionController.renderInTemplate(SpringActionController.java:365)
        at org.labkey.api.action.SpringActionController.handleRequest(SpringActionController.java:293)
        at org.labkey.api.view.ViewServlet.dispatchActionController(ViewServlet.java:315)
        at org.labkey.api.view.ViewServlet._dispatchActionURL(ViewServlet.java:152)
        at org.labkey.api.view.ViewServlet.service(ViewServlet.java:128)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:803)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:269)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.labkey.api.data.TransactionFilter.doFilter(TransactionFilter.java:36)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.labkey.core.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:124)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.labkey.api.module.ModuleLoader.doFilter(ModuleLoader.java:899)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.labkey.api.security.AuthFilter.doFilter(AuthFilter.java:94)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:210)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:174)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:108)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:151)
        at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:870)
        at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665)
        at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528)
        at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
        at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:685)
        at java.lang.Thread.run(Unknown Source)