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HIV Study Tutorial
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NIMHPortions.xls

Sheet1 SubjectID SampleID PortionID DateSeparated Division 20021 789 7891 5/2/71 Half 20001 456 4561 5/2/71 Half 20022 786 7861 5/2/71 Half 20023 450 4501 5/2/71 Half 20024 342 3421 5/2/71 Half 20025 783 7831 5/2/71 Half 20002 890 8901 5/2/71 Half 50002 990 9901 5/2/71 Half 50003 129 1291 5/2/71 Half 10001 617 6171 5/2/71 Half 10002 712 7121 5/2/71 Half 50001 888 8881 5/2/71 Half 10003...

NIMHPortions.xls

Sheet1 SubjectID SampleID PortionID DateSeparated Division 20021 789 7891 5/2/71 Half 20001 456 4561 5/2/71 Half 20022 786 7861 5/2/71 Half 20023 450 4501 5/2/71 Half 20024 342 3421 5/2/71 Half 20025 783 7831 5/2/71 Half 20002 890 8901 5/2/71 Half 50002 990 9901 5/2/71 Half 50003 129 1291 5/2/71 Half 10001 617 6171 5/2/71 Half 10002 712 7121 5/2/71 Half 50001 888 8881 5/2/71 Half 10003...

SVN revision 26741: [Search] module experienced errors during startup

LUCENE_43  Full details: java.lang.NoSuchFieldError: LUCENE_43     at org.labkey.search.model.LuceneSearchServiceImpl.<clinit>(LuceneSearchServiceImpl.java:113)     at org.labkey.search.SearchModule.init(SearchModule.java:109)     at org.labkey.api.module.DefaultModule.initialize(DefaultModule.java:186)     at org.labkey.api.module.ModuleLoader.doInit(ModuleLoader.java:293)     at org.labkey.api.module.ModuleLoader.init(ModuleLoader.java:220)...

"cpas[1].log.1" attached to message "500: Unexpected server error"

03 Feb 2006 10:46:57,287 ERROR Global : Unhandled exception caught in Global.app: 500: Unexpected server error java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at org.fhcrc.cpas.util.BoundMap.get(BoundMap.java:89) at org.fhcrc.cpas.view.GroovyView.createModelBinding(GroovyView.java:475) at org.fhcrc.cpas.view.GroovyView.renderView(GroovyView.java:447) at org.fhcrc.cpas.view.WebPartView.render(WebPartView.java:123)...

"cpas.log.1" attached to message "500: Unexpected server error"

03 Feb 2006 10:46:57,287 ERROR Global : Unhandled exception caught in Global.app: 500: Unexpected server error java.lang.RuntimeException: java.lang.reflect.InvocationTargetException at org.fhcrc.cpas.util.BoundMap.get(BoundMap.java:89) at org.fhcrc.cpas.view.GroovyView.createModelBinding(GroovyView.java:475) at org.fhcrc.cpas.view.GroovyView.renderView(GroovyView.java:447) at org.fhcrc.cpas.view.WebPartView.render(WebPartView.java:123)...

NIMHSlides.xls

Sheet1 SubjectID SampleID PortionID SlideID StainPositive StainDate 20021 789 7891 1 Y 5/3/71 20001 456 4561 2 Y 5/3/71 20022 786 7861 3 Y 5/3/71 20023 450 4501 4 Y 5/3/71 20024 342 3421 5 Y 5/3/71 20025 783 7831 6 Y 5/3/71 20002 890 8901 7 Y 5/3/71 50002 990 9901 8 N 5/3/71 50003 129 1291 9 N 5/3/71 10001 617 6171 10 N 5/3/71 10002 712 7121 11 N 5/3/71 50001 888 8881 12 N 5/3/71 10003...

NIMHSlides.xls

Sheet1 SubjectID SampleID PortionID SlideID StainPositive StainDate 20021 789 7891 1 Y 5/3/71 20001 456 4561 2 Y 5/3/71 20022 786 7861 3 Y 5/3/71 20023 450 4501 4 Y 5/3/71 20024 342 3421 5 Y 5/3/71 20025 783 7831 6 Y 5/3/71 20002 890 8901 7 Y 5/3/71 50002 990 9901 8 N 5/3/71 50003 129 1291 9 N 5/3/71 10001 617 6171 10 N 5/3/71 10002 712 7121 11 N 5/3/71 50001 888 8881 12 N 5/3/71 10003...

Uncategorized SQLException for SQL

hi, I am running into an issue with an installation of LabKey. Several times I have encountered the following error and had to restart Tomcat to fix it. I have pasted the last error from the logs below. We're running 14.3 on Ubuntu 14.04.1 LTS with PostgreSQL 9.3. Let me know if you need more information. Thanks, bront … from labkey.log     SELECT * FROM core.containers WHERE...

Step 2: Study Reports

In this step we will look at the variety of reports available in the online example. We will look at both built-in reports (automatically available in all study folders) and custom reports (created by the study researchers or data analysts). As you progress with the walkthrough, notice two things: First, all of these reports are 'live', that is, they represent the current state of the underlying...

"cpas_log.txt" attached to message "Search MS2 Data Failed"

06 Jan 2006 16:07:43,194 ERROR MS2PipelineProvider: Error writing default input file. java.io.FileNotFoundException: /h1/lyang/default_input.xml (Permission denied) at java.io.FileOutputStream.open(Native Method) at java.io.FileOutputStream.<init>(FileOutputStream.java:179) at java.io.FileOutputStream.<init>(FileOutputStream.java:131) at java.io.FileWriter.<init>(FileWriter.java:73)...

"cpas.addUser.log" attached to message "Uploading MS2 Data"

21 Dec 2005 17:48:26,207 ERROR ViewServlet : error javax.servlet.ServletException: javax/activation/DataSource at org.apache.beehive.netui.pageflow.internal.DefaultExceptionsHandler.handleException(DefaultExceptionsHandler.java:188) at org.apache.beehive.netui.pageflow.FlowController.handleException(FlowController.java:258) at org.apache.beehive.netui.pageflow.FlowController.internalExecute(FlowController.java:442)...

Query Metadata: Examples

This topic provides examples of metadataSql used to change the display and behavior of fields in tables and queries. Auditing Level Conditional Formatting Include Row Selection Checkboxes Hide a Field from Users Show/Hide Columns on Insert and/or Update Use a Format String for Display Use a Text Expression for Display Set a Display Width for a Column Display Columns in Specific Order...

Ontology Lookup

Premium Feature — Available in the Enterprise Edition of LabKey Server. Learn more or contact LabKey. Ontology Lookup Data Type Lookup Rules Usage Example Concept Picker for Insert/Update with Type-ahead Initialize Expected Vocabulary Ontology Lookup Data Type Once an ontology has been loaded and the module enabled in your folder, the fieldEditor will include an Ontology Lookup data...

Problem to Import FlowJo Workspace

Hi, I have a problem with my dataset when I am trying to import a Flowjob Workspace in my Labkey server (LabKey Server 19.3.0). 11 Jun 2021 16:51:18,000 DEBUG: Analysis results contains 275 statistics, 76 graphs 11 Jun 2021 16:51:21,656 ERROR: FlowJo Workspace import failed org.labkey.api.query.RuntimeValidationException: name: Value is too long for column 'name', a maximum length of 256 is allowed....

job stuck waiting status

Hi,    a user submit a job but it is stuck in waiting status in the activemq log after it finish the first FAASTA check. 01 Dec 2017 11:40:26,278 INFO : X! Tandem search for all 01 Dec 2017 11:40:26,281 INFO : ======================================= 01 Dec 2017 11:40:26,283 INFO : abac.mzXML 01 Dec 2017 11:40:26,285 INFO : casfdsa.mzXML 01 Dec 2017 11:40:26,287 INFO : cafdsa.mzXML 01 Dec...

NIMHSamples.xls

Sheet1 SubjectID SampleID DateObtained SampleType Volume VolumeUnits 20021 789 5/1/71 Blood 2 ml 20001 456 5/1/71 Blood 2 ml 20022 786 5/1/71 Blood 1 ml 20023 450 5/1/71 Blood 1 ml 20024 342 5/1/71 Blood 1 ml 20025 783 5/1/71 Blood 1 ml 20002 890 5/1/71 Blood 2 ml 50002 990 5/1/71 Blood 2 ml 50003 129 5/1/71 Blood 2 ml 10001 617 5/1/71 Blood 2 ml 10002 712 5/1/71 Blood 2 ml 50001 888...

NIMHSamples.xls

Sheet1 SubjectID SampleID DateObtained SampleType Volume VolumeUnits 20021 789 5/1/71 Blood 2 ml 20001 456 5/1/71 Blood 2 ml 20022 786 5/1/71 Blood 1 ml 20023 450 5/1/71 Blood 1 ml 20024 342 5/1/71 Blood 1 ml 20025 783 5/1/71 Blood 1 ml 20002 890 5/1/71 Blood 2 ml 50002 990 5/1/71 Blood 2 ml 50003 129 5/1/71 Blood 2 ml 10001 617 5/1/71 Blood 2 ml 10002 712 5/1/71 Blood 2 ml 50001 888...

"unix-ms2admin-exception.txt" attached to message "Error getting "Protein Annotations Loaded" status in showMS2Admin.view"

03 Feb 2006 17:22:38,295 ERROR GroovyView : error executing /_views/HomeTemplate.gm java.io.IOException: java.lang.ClassCastException: java.lang.Thread at MS2.MS2Controller$DisplayThreadStatusColumn.renderGridCellContents(MS2Controller.java:1286) at org.fhcrc.cpas.data.DisplayColumn.renderGridDataCell(DisplayColumn.java:261) at org.fhcrc.cpas.data.DataRegion.renderTableRow(DataRegion.java:663)...

"labkey.log" attached to message "Corrupted datasets view"

WARN AuditLogImpl 2013-06-19 09:47:07,858 FifteenMinuteDigest : user was not specified, defaulting to guest user. WARN AuditLogImpl 2013-06-19 10:02:07,940 FifteenMinuteDigest : user was not specified, defaulting to guest user. WARN AuditLogImpl 2013-06-19 10:17:07,877 FifteenMinuteDigest : user was not specified, defaulting to guest user. WARN...

Java api: uploading files to a list

Hello, We are using an external tool to view and modify lists in labkey. We have lists with some columns of Attachment type (file type). How can we modify the rows of the lists from the external application using Java Api? The method UpdateRowsCommand only supports string type. We would like to upload files to certains rows in these lists of labkey. We are trying to use UpdateRowsCommand: ...