problem generating graphs | mark.shifman | 2014-05-12 07:41 | |||||||||||||||||||||
Status: Closed | |||||||||||||||||||||||
(I think I just sent an empty message arggg) I am having problems generating graphs from a page that starts like this Flow Experiment Runs > 96 WellBatch0 - PanSurf1-4 > FCS File 'Panel L1_C1-L1_110191_PBMC_10182011_C01.fcs' Run Name: 96 WellBatch0 - PanSurf1-4 Analysis Folder: Flow Experiment Runs Well Name: Panel L1_C1-L1_110191_PBMC_10182011_C01.fcs and ends like this. FCS Files derived from this file and associated FCS Analyses: Name Run Name Analysis Folder FCS File 'Panel L1_C1-L1_110191_PBMC_10182011_C01.fcs' Panel L1.wsp Flow Experiment Runs FCSAnalysis 'Panel L1_C1-L1_110191_PBMC_10182011_C01.fcs' Panel L1.wsp Flow Experiment Runs More Graphs Keywords from the FCS file Download FCS file Experiment Run Graph Details the complete error message is shown below. but the jar is indeed there root@labkey:/usr/local/labkey/labkeywebapp/WEB-INF/lib# ls jfree* jcom* jcommon-1.0.17.jar jfreechart-1.0.14.jar any help would be appreciated. ERROR WellController 2014-05-12 10:32:51,576 http-8080-6 : Error generating graph java.lang.NoClassDefFoundError: Could not initialize class org.jfree.chart.JFreeChart at org.labkey.flow.analysis.web.FCSAnalyzer.generateGraph(FCSAnalyzer.java:138) at org.labkey.flow.analysis.web.FCSAnalyzer.generateGraph(FCSAnalyzer.java:166) at org.labkey.flow.analysis.web.FCSAnalyzer.generateGraph(FCSAnalyzer.java:177) at org.labkey.flow.analysis.web.FCSAnalyzer.generateGraphs(FCSAnalyzer.java:199) at org.labkey.flow.script.FlowAnalyzer.generateGraph(FlowAnalyzer.java:80) at org.labkey.flow.controllers.well.WellController$GenerateGraphAction.getView(WellController.java:358) at org.labkey.flow.controllers.well.WellController$GenerateGraphAction.getView(WellController.java:349) at org.labkey.api.action.SimpleViewAction.handleRequest(SimpleViewAction.java:58) at org.labkey.api.action.BaseViewAction.handleRequestInternal(BaseViewAction.java:177) at org.springframework.web.servlet.mvc.AbstractController.handleRequest(AbstractController.java:153) at org.labkey.api.action.SpringActionController.handleRequest(SpringActionController.java:354) at org.labkey.api.module.DefaultModule.dispatch(DefaultModule.java:989) at org.labkey.api.view.ViewServlet.service(ViewServlet.java:165) at javax.servlet.http.HttpServlet.service(HttpServlet.java:723) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.labkey.api.data.TransactionFilter.doFilter(TransactionFilter.java:36) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.labkey.core.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:118) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.labkey.api.module.ModuleLoader.doFilter(ModuleLoader.java:800) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.labkey.api.security.AuthFilter.doFilter(AuthFilter.java:171) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:861) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:606) at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) at java.lang.Thread.run(Thread.java:724) |
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