| | | | | | | | | | | | | | 5-Neg Cont |
| L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 195,996 | 190,824 | 97.361 | 140,580 | 191,013 | 185,748 | 97.24 | 135,677 |
| 5-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 186,030 | 180,672 | 97.12 | 130,774 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 229,006 | 224,426 | 98 | 210,701 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 6-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 204,668 | 200,745 | 98.083 | 188,875 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 238,835 | 231,531 | 96.942 | 214,245 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 7-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 158,188 | 152,634 | 96.489 | 143,627 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 211,502 | 206,324 | 97.552 | 183,233 | 205,084 | 199,964 | 97.502 | 177,472 |
| 8-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 198,666 | 193,604 | 97.452 | 171,711 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 79,584 | 75,601 | 94.995 | 52,938 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 120,834 | 112,683 | 93.254 | 76,534 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 164,137 | 154,397 | 94.066 | 104,627 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 88,186 | 82,423 | 93.465 | 60,598 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 135,018 | 125,738 | 93.127 | 65,934 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 123,240 | 116,104 | 94.21 | 88,938 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 148,858 | 141,663 | 95.167 | 112,909 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Env1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 125,996 | 118,209 | 93.82 | 91,798 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 146,947 | 139,615 | 95.01 | 98,196 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 163,540 | 155,608 | 95.15 | 110,239 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 197,678 | 188,835 | 95.527 | 123,875 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 114,653 | 109,278 | 95.312 | 79,073 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 147,077 | 138,863 | 94.415 | 69,319 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 149,905 | 141,771 | 94.574 | 104,303 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 182,553 | 173,989 | 95.309 | 133,938 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Env2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 136,838 | 129,151 | 94.382 | 97,466 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 150,048 | 143,349 | 95.535 | 96,048 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 170,560 | 163,980 | 96.142 | 118,337 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 227,078 | 217,639 | 95.843 | 154,108 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 132,124 | 126,620 | 95.834 | 90,171 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 169,752 | 160,805 | 94.729 | 80,623 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 167,547 | 158,811 | 94.786 | 112,090 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 202,146 | 192,296 | 95.127 | 191,888 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Env3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 171,605 | 162,032 | 94.421 | 107,120 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 198,225 | 194,418 | 98.079 | 181,050 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 185,403 | 181,825 | 98.07 | 162,088 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 240,317 | 235,732 | 98.092 | 202,652 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 184,723 | 181,797 | 98.416 | 172,377 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 202,304 | 195,926 | 96.847 | 146,472 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 235,534 | 230,556 | 97.887 | 217,988 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 216,138 | 210,553 | 97.416 | 195,643 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Gag1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 196,737 | 191,095 | 97.132 | 169,562 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 230,794 | 224,466 | 97.258 | 204,000 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 216,096 | 210,536 | 97.427 | 188,460 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 247,702 | 241,611 | 97.541 | 204,874 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 193,898 | 190,015 | 97.997 | 178,827 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 204,854 | 196,877 | 96.106 | 143,937 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 226,499 | 220,453 | 97.331 | 203,695 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 209,583 | 203,396 | 97.048 | 186,972 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Gag2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 207,105 | 201,382 | 97.237 | 178,304 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 252,319 | 245,219 | 97.186 | 220,891 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 252,641 | 245,305 | 97.096 | 218,608 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 288,720 | 280,676 | 97.214 | 234,228 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 220,689 | 215,685 | 97.733 | 199,622 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 219,312 | 210,955 | 96.189 | 153,699 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 250,388 | 243,535 | 97.263 | 223,958 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 208,416 | 202,617 | 97.218 | 184,677 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Pol1 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 186,792 | 181,012 | 96.906 | 158,081 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 243,112 | 236,578 | 97.312 | 217,439 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 249,890 | 243,144 | 97.3 | 218,329 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 300,950 | 292,271 | 97.116 | 242,971 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 244,244 | 238,305 | 97.568 | 224,115 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 245,596 | 235,304 | 95.809 | 172,733 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 280,592 | 273,593 | 97.506 | 256,594 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 224,604 | 217,992 | 97.056 | 200,488 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Pol2 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 230,278 | 223,474 | 97.045 | 198,284 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 218,530 | 211,497 | 96.782 | 191,923 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 227,613 | 220,615 | 96.925 | 196,835 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 258,024 | 250,733 | 97.174 | 205,091 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 201,703 | 195,974 | 97.16 | 182,243 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 227,890 | 217,596 | 95.483 | 157,455 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 248,924 | 240,673 | 96.685 | 222,515 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 193,362 | 186,860 | 96.637 | 169,911 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Pol3 | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 190,932 | 183,366 | 96.037 | 160,806 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 208,312 | 202,762 | 97.336 | 185,678 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 240,318 | 233,186 | 97.032 | 208,833 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 280,176 | 272,123 | 97.126 | 230,909 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 226,610 | 221,037 | 97.541 | 208,806 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 225,105 | 215,559 | 95.759 | 159,987 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 224,042 | 217,896 | 97.257 | 203,134 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 197,626 | 191,841 | 97.073 | 177,275 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-Nef | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 207,490 | 199,966 | 96.374 | 178,180 | 205,084 | 199,964 | 97.502 | 177,472 |
| 1-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 201,521 | 194,977 | 96.753 | 176,848 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 244,010 | 236,010 | 96.721 | 210,179 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 265,481 | 257,381 | 96.949 | 217,882 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 218,857 | 213,139 | 97.387 | 201,038 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 231,235 | 220,747 | 95.464 | 162,637 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 263,172 | 255,085 | 96.927 | 237,126 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 236,066 | 228,499 | 96.795 | 211,763 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 218,050 | 209,697 | 96.169 | 187,109 | 205,084 | 199,964 | 97.502 | 177,472 |
| 9-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 203,855 | 197,962 | 97.109 | 182,701 | 199,609.5 | 193,702.5 | 97.039 | 177,725 |
| 9-Neg Cont | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 195,364 | 189,443 | 96.969 | 172,749 | 199,609.5 | 193,702.5 | 97.039 | 177,725 |
| 9-CMV | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 225,004 | 218,118 | 96.94 | 201,794 | 199,609.5 | 193,702.5 | 97.039 | 177,725 |
| 9-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 206,458 | 200,470 | 97.1 | 185,652 | 199,609.5 | 193,702.5 | 97.039 | 177,725 |
| 1-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 210,888 | 204,740 | 97.085 | 189,608 | 131,540 | 127,545.5 | 95.911 | 118,420.5 |
| 2-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 221,456 | 215,056 | 97.11 | 194,821 | 180,201 | 175,855.5 | 97.546 | 155,659 |
| 3-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 230,093 | 224,044 | 97.371 | 188,982 | 222,038.5 | 217,839.5 | 98.119 | 184,743 |
| 4-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 186,095 | 181,223 | 97.382 | 171,943 | 170,833 | 168,136.5 | 98.428 | 158,194 |
| 5-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 195,399 | 187,521 | 95.968 | 142,771 | 191,013 | 185,748 | 97.24 | 135,677 |
| 6-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 238,828 | 231,999 | 97.141 | 219,514 | 216,837 | 212,585.5 | 98.042 | 199,788 |
| 7-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 220,584 | 213,851 | 96.948 | 199,515 | 198,511.5 | 192,082.5 | 96.715 | 178,936 |
| 8-SEB | | L02-060413-PV1-R1 analysis | L02-060413-PV1-R1 comp matrix | 211,387 | 204,834 | 96.9 | 183,416 | 205,084 | 199,964 | 97.502 | 177,472 |
|