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HIV Study Tutorial
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01-11A12-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12 Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

01-11A12-IgA-Biotin-1.xls

ENV1 (31) File Name: 01-11A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12 Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

01-11A12-IgA-Biotin.xls

ENV1 (31) File Name: 01-11A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:47 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 01-11A12 Signed By: Elizabeth Nelson Document ID: 9994 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

"running threads.txt" attached to message "NCBI database - annotatins problem?"

Currently Running Threads ajp-8009-Acceptor-0 (RUNNABLE) ajp-8009-Poller-0 (WAITING) ajp-8009-Poller-1 (WAITING) ajp-8009-Poller-2 (WAITING) ajp-8009-Poller-3 (WAITING) ajp-8009-Poller-4 (WAITING) ajp-8009-Poller-5 (WAITING) ajp-8009-Poller-6 (WAITING) ajp-8009-Poller-7 (WAITING) AnnotLoader7 (WAITING) AnnotLoader8 (WAITING) AWT-Windows (RUNNABLE) BreakpointThread (TIMED_WAITING) ContainerBackgroundProcessor[StandardEngine[Catalina]]...

lin_384_well_metadata.xls

data SampleWellGroup PlateLocation SpecimenID ParticipantID VisitID Date SampleDescription Lot Number InitialDilution Factor Method Specimen 1 A3-A4 4E10 Antibody Lot 1 10 3 Concentration Specimen 2 B3-B4 2F5 Antibody Lot 1 10 3 Concentration Specimen 3 C3-C4 2G12 Antibody Lot 1 10 3 Concentration Specimen 4 D3-D4 sCD4 Antibody Lot 1 10 3 Concentration Specimen 5 E3-E4 HIVIG Antibody...

Critical Error when Upgrading to Labkey 15.2

Hi Folks, We are experiencing critical errors when attempting to upgrade Labkey server as follows. * Java 1.7.X --> 1.8.X * Labkey 14.4 --> 15.2 * PostgreSQL 8.4 --> 9.4 * Apache Tomcat 7.0.X Once the DB has been backed up, we are attempting to run the upgrade script on CentOS release 6.6 (Final) as follows ./manual-upgrade.sh -l /data/local/LabKey14.3-35337.10-bin -d /root/LabKey15.2-39071.18-bin...

Sample ID Naming

Each Sample and Source in the system must have a unique name/id within its type. The unique names can be provided by the user, or can be generated by the system. When you ask the system to generate names, you specify a Naming Pattern to use. For each type, you will choose one of these two options. If you already use a unique naming structure outside the system, you will want to ensure those names...

"labkey.log" attached to message "Error while running trigger script"

INFO ScriptService$Console 2020-04-07 17:59:07,547 io-127.0.0.1-8080-exec-4 : ** evaluating: queries/study/BasicsCase.js INFO ScriptService$Console 2020-04-07 17:59:07,584 io-127.0.0.1-8080-exec-4 : Getting entries in BasicsCase, success: 33 rows returned. INFO ScriptService$Console 2020-04-07 17:59:07,584 io-127.0.0.1-8080-exec-4 : Selected rows BasicsCase: INFO ScriptService$Console...

"getContainers-atlas-test.txt" attached to message "Strange behavior with LABKEY.Security.getContainers() function"

https://atlas-test.scharp.org/cpas/project/HVTN/Specimen%20Management/Lab%20Program/begin.view? https://atlas-test.scharp.org/cpas/project/HVTN/getContainers.view?_dc=1348616911600&container=%2FHVTN%2FSpecimen%20Management%2FLab%20Program%2F&includeSubfolders=false _dc=1348616911600 container=/HVTN/Specimen Management/Lab Program/ includeSubfolders=false { "sortOrder": 0, "children": [...

"Physical Exam doesnt work.xls" attached to message "Unable to import dates"

data ParticipantID Date SystolicBloodPressure DiastolicBloodPressure Pulse Respirations Height Weight ARVRegimenType Pregnancy Language Signature 133428 2008-08-15 131 91 72 16 165 67.5 NVP-XR English 133428 2008-10-10 145 104 67 19 165 83.5 NVP-XR English 133428 2009-09-11 132 114 66 12 165 89.5 NVP-XR English 133428 2009-11-06 163 90 76 14 165 71.5 NVP-XR English 133428 2009-12-04 164...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

10-13A12-IgA-Biotin.xls

ENV1 (31) File Name: 10-13A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 15-Jul-2011, 01:37 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 10-13A12 Signed By: Elizabeth Van Nostrand Document ID: 9997 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100...

09-16A32-IgA-Biotin.xls

ENV1 (31) File Name: 09-16A32-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 14-Jul-2011, 01:08 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 09-16A32 Signed By: Josh Eckels Document ID: 9910 RP1 PMT (Volts): 738.95 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

Sample ID Naming

Each sample in the system must have a unique name/id within its Sample Type. The unique sample names can be provided by the user, or can be generated by the system. When you ask the system to generate names, you specify a naming pattern to use. For each type of sample, you will choose one of these two options. If you already use a unique naming structure outside the system, you will want to ensure...

New certificate for globus fails

Hi all, Our security certificate for Globus expired and we created a new one following the instructions in https://www.labkey.org/wiki/home/Documentation/page.view?name=globusServer. Everything seems to go fine until we used the new user certificates in the project. The jobs don't get submitted to the cluster. Here's the (part of the) error message from the log file: ERROR: ; nested exception is:...