• Sign In

Search site

HIV Study Tutorial
Found 267 results
Displaying page 10 of 14

CTL_040A20042503-0001p.xls

040A20042503-0001 Software version: ImmunoSpot 3.2 Beta 1 Counted: Fri Apr 02 09:47:07 2004 Z:\040 Protocol\040A20042503-0001\counted\040A20042503-0001.xls Image size: 490x480 Assay: Assay 1 Sensitivity: 160 Min. SpotSize: 0.0008 Sq.mm Max. SpotSize: 0.1269 Sq.mm Oversized Spots were Estimated Spot Separation: 3.00 Diffuse Spot Process was Off Diffuseness: 10 Gradient...

CTL_040A20042503-0001p.xls

040A20042503-0001 Software version: ImmunoSpot 3.2 Beta 1 Counted: Fri Apr 02 09:47:07 2004 Z:\040 Protocol\040A20042503-0001\counted\040A20042503-0001.xls Image size: 490x480 Assay: Assay 1 Sensitivity: 160 Min. SpotSize: 0.0008 Sq.mm Max. SpotSize: 0.1269 Sq.mm Oversized Spots were Estimated Spot Separation: 3.00 Diffuse Spot Process was Off Diffuseness: 10 Gradient...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0949.tsv

ParticipantId sourcelsid date Day DataSets/Demographics/Gender oldcd4 Lymphocytes Hemoglobin DataSets/Demographics/Group DataSets/Demographics/TreatmentGroup CD4 119180 4/20/2008 0 f 239 1802 17 Group 1: Acute HIV-1 No ARV 120 119180 5/18/2008 28 f 266 1787 18 Group 1: Acute HIV-1 No ARV 133 119180 6/15/2008 56 f 224 1843 19 Group 1: Acute HIV-1 No ARV 112 119180 7/13/2008 84 f 163 1780 17 Group...

Luminex_Assay_200-2015-06-09-1232.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

Question about X! tendem parameters

1. I would like know all the default parameters for X! tendem search in CPAS e.g. tryptic cleavage, 2.0 parent mass error range, etc. 2. I would like to search for all peptides cleavage not restricted to tryptic cleavage, which parameter should I override? Thank you. Wonjong You can find the information at Wiki Configure X! Tandem Parameters. To get the defaults used, you can check out...

multiple mzXML files

1. I have many mzXML files under root directory. It looks like only one mzXML file can be processed at a time. Do I need another module to process, for example, 40 mzXML files at a time with one protocol? 2. I converted 40 mzXML files into a pepXML files by 'interact'. To upload this pepXML file, I went through MS2, manage runs, and add runs. Is it correct? Hi Wonjong, 1. If you refer to merging...

dataset5007.tsv

ParticipantId date QCStateLabel CD4 Lymphocytes Hemoglobin ViralLoad 101344 2008-04-30 00:00:00.0 811 1491 14.0 101344 2008-05-28 00:00:00.0 794 1446 13.0 101344 2008-06-25 00:00:00.0 653 1560 12.0 101344 2008-07-23 00:00:00.0 1176 1486 11.0 101344 2008-08-20 00:00:00.0 1292 1343 11.0 101344 2008-09-17 00:00:00.0 1210 1186 12.0 101344 2008-10-15 00:00:00.0 1158 1320 13.0 101344 2008-11-12...

"logfile.txt" attached to message "Failed to remove work directory"

29 дек 2008 13:07:14,338 INFO : Check FASTA validity 29 дек 2008 13:07:14,338 INFO : ======================================= 29 дек 2008 13:07:14,338 INFO : 29 дек 2008 13:07:15,260 INFO : MzXML2Search output 29 дек 2008 13:07:15,260 INFO : ======================================= 29 дек 2008 13:07:15,260 INFO : running: MzXML2Search -mgf 9_1-F,8_01_3855.mzXML 29 дек 2008 13:07:15,307 INFO :...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0952.tsv

ParticipantId date QCStateLabel CD4 Lymphocytes Hemoglobin ViralLoad 101344 2008-04-30 00:00:00.0 811 1491 14.0 101344 2008-05-28 00:00:00.0 794 1446 13.0 101344 2008-06-25 00:00:00.0 653 1560 12.0 101344 2008-07-23 00:00:00.0 1176 1486 11.0 101344 2008-08-20 00:00:00.0 Not Yet Reviewed 1292 1343 11.0 10000 101344 2008-09-17 00:00:00.0 1210 1186 12.0 101344 2008-10-15 00:00:00.0 1158 1320...

Lab Results.xls

data ParticipantID Source_Lsid Date Day CD4+ Lymphs Hemoglobin Cohort Viral_Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227 772 1591 15.0 101344 2009-01-07...

Lab Results.xls

data Participant ID Source Lsid Date Day CD4+ (cells/mm3) Lymphs (cells/mm3) Hemoglobin Cohort Viral Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227...

Troubleshoot Installation and Configuration

In case of errors or other problems when installing and running LabKey Server, first review installation basics and options linked in the topic: config. This topic provides additional troubleshooting suggestions if the instructions in that topic do not resolve the issue. LabKey Logs Log Rotation and Storage Service Startup Must Create labkey-tmp Location Linux Service Troubleshooting...

"labkey.log" attached to message "FastaAdmin already exists"

ERROR DavCrawler 2015-04-29 01:01:12,397 DavCrawler : Unexpected error org.labkey.api.util.ConfigurationException: Can't create a database connection to org.apache.tomcat.dbcp.dbcp.BasicDataSource@830d625 at org.labkey.api.data.DbScope._getConnection(DbScope.java:657) at org.labkey.api.data.DbScope.getConnection(DbScope.java:472) at org.labkey.api.data.JdbcCommand.getConnection(JdbcCommand.java:55)...

"SmallCAT.log" attached to message "Mascot error in CPAS"

12 Mar 2008 13:31:29,876 INFO : Mascot search for SmallICAT.mzXML 12 Mar 2008 13:31:29,878 INFO : ======================================= 12 Mar 2008 13:31:29,945 INFO : MzXML2Search output 12 Mar 2008 13:31:29,952 INFO : ======================================= 12 Mar 2008 13:31:30,804 INFO : running: MzXML2Search -mgf SmallICAT.mzXML 12 Mar 2008 13:31:30,845 INFO : 12 Mar 2008 13:31:30,846 INFO...

"MFL25-101906-pl1011.log" attached to message "use one database file for different MS2 runs"

18 Feb 2007 08:13:37,886 INFO : X! Tandem search for MFL25-101906-pl1011.mzXML 18 Feb 2007 08:13:37,895 INFO : ======================================= 18 Feb 2007 08:13:38,198 INFO : tandem.exe output 18 Feb 2007 08:13:38,200 INFO : ======================================= 18 Feb 2007 08:13:38,201 INFO : running: tandem.exe input.xml 18 Feb 2007 08:13:39,006 INFO : 18 Feb 2007 08:13:39,017 INFO :...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

"error.log" attached to message "Error comparing MS2 runs"

ERROR Table 2008-04-22 12:20:05,726 t: http-8080-Processor17 : internalExecuteQuery org.postgresql.util.PSQLException: ERROR: integer out of range at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:1592) at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1327) at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:192)...

"log_0207.txt" attached to message "Mascot upload"

07 Feb 2007 11:59:07,159 INFO : Mascot search for u937_1.mzXML 07 Feb 2007 11:59:07,159 INFO : ======================================= 07 Feb 2007 11:59:07,222 INFO : MzXML2Search output 07 Feb 2007 11:59:07,222 INFO : ======================================= 07 Feb 2007 11:59:07,470 INFO : running: MzXML2Search -mgf u937_1.mzXML 07 Feb 2007 11:59:07,515 INFO : 07 Feb 2007 11:59:07,515 INFO...

"rebuild.txt" attached to message "gradle build: intellij hot swapping not working anymore?"

Information:java: Errors occurred while compiling module 'api_main' Information:javac 1.8.0_131 was used to compile java sources Information:12/11/2017 1:50 PM - Compilation completed with 41 errors and 1,085 warnings in 24m 15s 511ms C:\discvr17.2\externalModules\snprcEHRModules\snprc_r24\resources\transform\src\MicrobiomeTransform.java Warning:Warning:line (46)java: getCellType() in org.apache.poi.ss.usermodel.Cell...