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"B_090310_09_G056L9_A09.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

21 May 2009 14:12:39,514 INFO : Mascot search for B_090310_09_G056L9_A09 21 May 2009 14:12:39,514 INFO : ======================================= 21 May 2009 14:12:40,296 INFO : Check FASTA validity 21 May 2009 14:12:40,296 INFO : ======================================= 21 May 2009 14:12:40,358 INFO : 21 May 2009 14:12:40,405 INFO : MzXML2Search output 21 May 2009 14:12:40,405 INFO : =======================================...

"errorlog.txt" attached to message "Mascot Search Error 112"

Mascot error log file Error [M00246 - Job -16 - X00422:taxonomy] - Wed Mar 30 23:15:33 2005 - The taxonomy node file [../taxonomy/gi_taxid_prot.dmp] is missing Error [M00384 - Job -16 - X00805:fasta] - Wed Mar 30 23:28:41 2005 - gi|231051 in database NCBInr_03302005.fasta has a taxonomy id (11311) with a missing link up to 'all species'. Check that nodes.dmp is up to date Error [M00384...

"catalina.out" attached to message "Upgrade to 19.1 and Java upgrade on Linux"

Jul 15, 2015 2:34:02 PM org.apache.catalina.startup.SetAllPropertiesRule begin WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'maxSpareThreads' to '75' did not find a matching property. Jul 15, 2015 2:34:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.63 Jul 15, 2015 2:34:02 PM org.apache.catalina.startup.VersionLoggerListener...

"postgresql-9.4-main.log" attached to message "Error during configuration"

2016-04-07 09:18:58 CEST [1700-1] postgres@postgres LOG: could not receive data from client: Connection reset by peer 2016-04-07 10:47:35 CEST [2381-1] postgres@postgres LOG: could not receive data from client: Connection reset by peer 2016-04-07 11:51:59 CEST [27280-2] LOG: received smart shutdown request 2016-04-07 11:51:59 CEST [16538-1] postgres@labkey FATAL: terminating connection due to...

"helloWorld.module" attached to message "Using JQuery in a Module... Path Issue..."

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.9.4 Created-By: 1.8.0_25-b17 (Oracle Corporation) config/module.xml ...

"labkey.log" attached to message "Mascot Default Parameters file"

INFO DbScope 2010-07-20 15:31:53,233 Thread-1 : Attempting to create database "labkey" INFO DbScope 2010-07-20 15:31:56,858 Thread-1 : Database "labkey" created INFO DbScope 2010-07-20 15:31:56,920 Thread-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"IPI2LL" attached to message "ERROR, XML_INPUT NOPLOT"

IPI00177321 IPI00140097 IPI00140101 IPI00043226 IPI00015171 172 IPI00177322 IPI00015173 5189 IPI00013311 79157 IPI00177323 IPI00177324 IPI00177325 IPI00157511 IPI00157512 IPI00043236 148646 IPI00043237 IPI00102268 140831 IPI00043240 89890 IPI00140105 IPI00173345 IPI00177326 124245 IPI00157513 92949 IPI00043242 154881 IPI00043243 201283 IPI00081052 IPI00015184...

"labkey.log" attached to message "Out of Memory Errors"

INFO DbScope 2010-07-20 15:31:53,233 Thread-1 : Attempting to create database "labkey" INFO DbScope 2010-07-20 15:31:56,858 Thread-1 : Database "labkey" created INFO DbScope 2010-07-20 15:31:56,920 Thread-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"APP_PS1_3Mon_1-02.dat" attached to message "Mascot2XML crash"

MIME-Version: 1.0 (Generated by Mascot version 1.0) Content-Type: multipart/mixed; boundary=gc0p4Jq0M2Yt08jU534c0p --gc0p4Jq0M2Yt08jU534c0p Content-Type: application/x-Mascot; name="parameters" LICENSE=Licensed to: University Of Kentucky, (1 processor). MP= NM= COM=Conversion of APP_PS1_3Mon_1-02.mzXML to mascot generic IATOL=0 IA2TOL=0 IASTOL=0 IBTOL=1 IB2TOL=1 IBSTOL=0 IYTOL=1...

"labkey.log" attached to message "Java Heap Memory Errors"

INFO DbScope 2010-07-20 15:31:53,233 Thread-1 : Attempting to create database "labkey" INFO DbScope 2010-07-20 15:31:56,858 Thread-1 : Database "labkey" created INFO DbScope 2010-07-20 15:31:56,920 Thread-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"catalina.out" attached to message "Labkey error"

Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.62 Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: May 7 2015 17:14:55 UTC Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.62.0 Jun 12, 2015 3:31:55 PM org.apache.catalina.startup.VersionLoggerListener...

"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences b ON (a.orgid=b.orgid) JOIN prot.identifiers c ON (c.seqid=b.seqid) WHERE c.identifier='O32012|YPZC_BACSU' DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences...

"labkey.log" attached to message "Remote DataSource Access Error"

INFO ModuleLoader 2016-12-19 17:59:44,325 localhost-startStop-1 : __ || | _ |_ |/ _ (� _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / INFO DbScope 2016-12-19 17:59:48,171 localhost-startStop-1 : Attempting to create database "labkey" INFO DbScope 2016-12-19...

"labkey.log" attached to message "Remote DataSource Access Error"

INFO ModuleLoader 2016-12-19 17:59:44,325 localhost-startStop-1 : __ || | _ |_ |/ _ (� _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / INFO DbScope 2016-12-19 17:59:48,171 localhost-startStop-1 : Attempting to create database "labkey" INFO DbScope 2016-12-19...

"ms2.module" attached to message "Question for cluster setting and Failed running xinteract"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 6278 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.0/server BuildUser: bmaclean BuildTime: May 3 2007, 1:12 PM BuildOS: Windows XP BuildPath: C:\\proj\\cpas_release\\server\\modules\\ms2 META-INF...

"ms2.module" attached to message "mzXML2search and mascot server error 26"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.1 Created-By: 11.2-b01 (Sun Microsystems Inc.) config/module.xml config/ms2Context.xml ...

"ms2.module" attached to message "Problem with loading uniprot_sprot.xml annotation file"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.0 Created-By: 1.6.0_01-b06 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 7137 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.2/serve r BuildUser: jeckels BuildTime: October 1 2007, 5:15 PM BuildOS: Windows Vista BuildPath: c:\\labkey2.2\\server\\modules\\ms2 META-INF...

"ms2.module" attached to message "Problem running xinteract in Labkey version 2.1"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.0 Created-By: 1.6.0_01-b06 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 6629 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.1/serve r BuildUser: jeckels BuildTime: July 6 2007, 5:24 PM BuildOS: Windows Vista BuildPath: c:\\labkey2.1\\server\\modules\\ms2 META-INF...

"ms2.module" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) config/module.xml config/ms2Context.xml ...

"labkey-errors.log" attached to message "Error deleting lists"

ERROR AbstractSearchService 2011-07-12 23:04:25,689 SearchService:index : Error indexing java.lang.NullPointerException at org.labkey.search.model.LuceneSearchServiceImpl.commitIndex(LuceneSearchServiceImpl.java:825) at org.labkey.search.model.AbstractSearchService.commit(AbstractSearchService.java:967) at org.labkey.search.model.AbstractSearchService$7.run(AbstractSearchService.java:994)...