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"ms2.module" attached to message "Question for cluster setting and Failed running xinteract"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 6278 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.0/server BuildUser: bmaclean BuildTime: May 3 2007, 1:12 PM BuildOS: Windows XP BuildPath: C:\\proj\\cpas_release\\server\\modules\\ms2 META-INF...

"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2007-01-09 15:50:06,687 JobThread-2.2 : SQL [3856] INSERT INTO exp.data ( LSID,Name,CpasType,SourceApplicationId,SourceProtocolLSID,DataFileUrl,RunId,Created,Container) VALUES ( ?,?,?,?,?,?,?,?,?); SELECT CURRVAL('exp.data_rowid_seq') ?[1] urn:lsid:mskcc.org:Data.Run-28:ScoredPepXmlFile ?[2] Scored Search Results ?[3] Data ?[4] 158 ?[5]...

"ms2.module" attached to message "mzXML2search and mascot server error 26"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.1 Created-By: 11.2-b01 (Sun Microsystems Inc.) config/module.xml config/ms2Context.xml ...

"ms2.module" attached to message "Problem with loading uniprot_sprot.xml annotation file"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.0 Created-By: 1.6.0_01-b06 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 7137 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.2/serve r BuildUser: jeckels BuildTime: October 1 2007, 5:15 PM BuildOS: Windows Vista BuildPath: c:\\labkey2.2\\server\\modules\\ms2 META-INF...

"ms2.module" attached to message "Problem running xinteract in Labkey version 2.1"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.7.0 Created-By: 1.6.0_01-b06 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 6629 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.1/serve r BuildUser: jeckels BuildTime: July 6 2007, 5:24 PM BuildOS: Windows Vista BuildPath: c:\\labkey2.1\\server\\modules\\ms2 META-INF...

"ms2.module" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) config/module.xml config/ms2Context.xml ...

"labkey20180611.log" attached to message "Assay run imports are successful, but no data rows are visible"

INFO ModuleLoader 2018-03-30 16:38:25,393 main : __ || | _ |_ |/ _ (� _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / ERROR DbScope 2018-03-30 16:38:27,675 main : Connection to "labkeyDataSource" at jdbc:postgresql://localhost/labkey failed...

"labkey.log" attached to message "Java Heap Memory Errors"

INFO DbScope 2010-07-20 15:31:53,233 Thread-1 : Attempting to create database "labkey" INFO DbScope 2010-07-20 15:31:56,858 Thread-1 : Database "labkey" created INFO DbScope 2010-07-20 15:31:56,920 Thread-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"labkey.log" attached to message "FastaAdmin already exists"

ERROR DavCrawler 2015-04-29 01:01:12,397 DavCrawler : Unexpected error org.labkey.api.util.ConfigurationException: Can't create a database connection to org.apache.tomcat.dbcp.dbcp.BasicDataSource@830d625 at org.labkey.api.data.DbScope._getConnection(DbScope.java:657) at org.labkey.api.data.DbScope.getConnection(DbScope.java:472) at org.labkey.api.data.JdbcCommand.getConnection(JdbcCommand.java:55)...

"cpas.log" attached to message "drt failure"

DEBUG OntologyManager 2006-06-23 10:47:18,390 JobThread-3.2 : getPropertyDescriptor for flow.cpas.fhcrc.org#statistic.Singlets/L/Live/3+/4+/(IFNg+&!IL2+&!IL4+&TNF+):Count container= /FlowVerifyProject/flowFolder returns from Cache object flow.cpas.fhcrc.org#statistic.Singlets/L/Live/3+/4+/(IFNg+&!IL2+&!IL4+&TNF+):Count name=Singlets/L/Live/3+/4+/(IFNg+&!IL2+&!IL4+&TNF+):Count project=/Shared...

"warburton_300nL_0718.xtan.xml" attached to message "XTandem search results in CPAS 1.7 vs 2.1"

IPI:IPI00467912.2|ENSEMBL:ENSMUSP00000078748 Tax_Id=10090 36 kDa protein PERRLLAIYT GGTIGMRSEG GGCHSPAPHP SWRSPWSPAS PDQRIIYTVL ECQPLFDSSD MTITEWVQIA QTIERHYAQY QGFVVIHGTD TMAFAASVLS FMLENLQKPV VLTGAQVPIH ALWSDGRENL LGALLMAGQY VIPEVCLFFQ NQLFRGNRTT KVDARRFAAF CSPNLPPLAT VGADVTTKKF LSVTACGSAV YIGSSVVISP VVLSSENTPK SVLPAQVRTF LQPPLKGVVM ETFGSGNGPT KPDLLQELRV AAEQGLIIVN CTHCLQGAVT SDYASGMAMA...

"warburton_300nL_0718.xtan.xml" attached to message "XTandem search results in CPAS 1.7 vs 2.1"

IPI:IPI00467912.2|ENSEMBL:ENSMUSP00000078748 Tax_Id=10090 36 kDa protein PERRLLAIYT GGTIGMRSEG GGCHSPAPHP SWRSPWSPAS PDQRIIYTVL ECQPLFDSSD MTITEWVQIA QTIERHYAQY QGFVVIHGTD TMAFAASVLS FMLENLQKPV VLTGAQVPIH ALWSDGRENL LGALLMAGQY VIPEVCLFFQ NQLFRGNRTT KVDARRFAAF CSPNLPPLAT VGADVTTKKF LSVTACGSAV YIGSSVVISP VVLSSENTPK SVLPAQVRTF LQPPLKGVVM ETFGSGNGPT KPDLLQELRV AAEQGLIIVN CTHCLQGAVT SDYASGMAMA...

"queries.tsv" attached to message "500 error trying to export a large query"

#Summary - unique queries: 37,746, elapsed time: 17d1h50m58s #HTTP Requests - query count: 6,898,904, query time (ms): 9,240,983, request count: 180802 #Background Threads - query count: 1,332,523, query time (ms): 17,737,065 Invocations Cumulative Average Max SQL 4,693,524 871,865 0 20,566 INSERT INTO assayresult."c13d712_mouse_microarray_data_fields" (specimenid, participantid, visitid, date, probe,...

"warburton_300nL_0718.xtan.xml" attached to message "XTandem search results in CPAS 1.7 vs 2.1"

IPI:IPI00280984.5|SWISS-PROT:O08919 Tax_Id=10090 Numb-like protein MSRSAAASGG PRRPDQHLSP APCGASGPPE TFRTESDGAG TMNKLRQSLR RRKPAYVPEA SRPHQWQADE DAVRKGTCSF PVRYLGHVEV EESRGMHVCE DAVKKLKAMG RKSVKSVLWV SADGLRVVDD KTKDLLVDQT IEKVSFCAPD RNLDKAFSYI CRDGTTRRWI CHCFLALKDS GERLSHAVGC AFAACLERKQ RREKECGVTA AFDASRTSFA REGSFRLSGG GRPAEREAGD KKKAEAAAAP AVAPGPAQPG HVSPTPATTS PGEKGEAGTP VAAGTTAAAI...