Good evening,

It seems the pipeline looks for [FKLMRWY]|{P} for trypsin/chymotrypsin digest but the GUI inputs as strict chymotrypsin in the XML:

<note label="protein, cleavage site" type="input">[RKWYF]|{P}</note>

I tried to correct the XML script to match and the GUI came up with an error: The enzyme '[RKWYFML]|{P}' was not found.

Is there a quick fix for this?

Best regards,

Trevor

Windows 7 Enterprise SP1 (64 bit)

Firefox Quantum 60.0.1 (64 bit)

Labkey v18.1-57017.17

Sorry there isn't an error code other than the following (trimmed out the list of accepted enzymes except the one in question).

21 May 2018 22:20:10,500 INFO : ERROR: Unsupported search enzyme.

21 May 2018 22:20:10,501 INFO : Use one of the following cleavage site specifications:

21 May 2018 22:20:10,508 INFO : trypsin/chymotrypsin - [FKLMRWY]|{P}

21 May 2018 22:20:10,504 INFO : Failed to complete task 'org.labkey.ms2.pipeline.tandem.XTandemSearchTask'

21 May 2018 22:20:10,510 ERROR: Failed running C:\Program Files (x86)\LabKey Server\bin\Tandem2XML, exit code 1