runProperties.tsv does not contain runDataUploadedFile field

LabKey Support Forum (Inactive)
runProperties.tsv does not contain runDataUploadedFile field Will Holtz  2015-01-09 13:56
Status: Closed
 
An issue I previously reported was recently fixed:
https://www.labkey.org/issues/home/Developer/issues/details.view?issueId=21065 (module based assays with transformed data don't serialize transformed data rows) -- thanks! I grabbed a recent revision of the development branch (r35909) and tried to perform the repro listed at the top of that issue (2014-07-10). When I try to import the data set into the assay (via an excel file), I get the error:

Error in file(file, "rt") : invalid 'description' argument
Calls: read.table -> file
Execution halted

The transformation script is failing because runProperties.tsv does not have a runDataUploadedFile field. This same step completes for me on my v14.2 system.

Should I expect this to work with the revision I checked out? Perhaps the revision I checked out has some incomplete work surrounding transformations?

thanks!
-Will
 
 
Will Holtz responded:  2015-01-15 09:45
I updated to r36002 and now the repo is functional for me.

-Will
 
jeckels responded:  2015-01-15 10:12
Hi Will,

Thanks for the update. Glad things are working at this point - sorry there was a hiccup for some window of time.

Thanks,
Josh
 
Karl Lum responded:  2015-01-15 10:20
Hi Will,

Sorry I didn't respond yesterday but I wasn't certain whether the fix I added would be optimal. It turns out that it was perhaps too aggressive and is causing some failures in other parts of the product. My plan is to revert that change and use a more targeted approach to fix that scenario.

I'll update this ticket when the fix gets committed.

thanks, Karl
 
Karl Lum responded:  2015-01-15 11:55
Hi Will,

I committed the new fix at r36010. Let me know if this still works for you.

thanks, Karl
 
Will Holtz responded:  2015-01-21 11:20
Hi Karl,

r36010 has been working for me. Thanks!

-Will
 
Karl Lum responded:  2015-01-21 11:29
Hi Will,

Thanks for checking this out.

- Karl