Hi Will,

You can define those values, but you would be defining them under the queries directory rather than the domains one.

So in this case, you would go to <module-name>/assay/ASSAY_NAME/queries and then edit the Data.query.xml, Run.query.xml, and Batches.query.xml files respectively instead of editing those XML files under the /domains directory.

For more information, please review the document here on the Assay Type development modules - https://www.labkey.org/wiki/home/Documentation/page.view?name=moduleassay

Let us know if you have any further questions!

Regards,

Jon