Hi Jon,

I've also done a bit more digging into this. I attempted to make a small repo of this using the General assay type. With the General assay, I was able to update the assayId field via transformedRunPropertiesFile.tsv. Then I tried modifying trunk/server/customModules/exampleassay by adding the attached transformation script. This is the same transformation script that successfully modified the assayId field of the General assay. The transformation script failed to update the assayId field within exampleassay.

I normally don't assume the path or filename for transformedRunPropertiesFile.tsv, but for the purpose of making a simple repo, I made such an assumption here.

-Will