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won't load fasta

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won't load fasta wnels2  2010-01-14 14:40
Status: Closed
 
Sorry to bug you again; almost done.
At the end of the run it failed loading the database. It had loaded the same database in the previous run though.
I just updated from the trunk about an hour ago.
Thanks,
Bill


14 Jan 2010 17:02:34,201 INFO : Starting to import FASTA file /labkey-root/cloud10/@files/YeastCombNR_20070207_ForwDecoy.fasta
14 Jan 2010 17:02:34,369 INFO : FASTA file "/labkey-root/cloud10/@files/YeastCombNR_20070207_ForwDecoy.fasta" not imported, but another file, '/labkey-root/cloud10/databases/YeastCombNR_20070207_ForwDecoy.fasta', has the same checksum
14 Jan 2010 17:02:34,382 ERROR: MS2 import failed
org.postgresql.util.PSQLException: ERROR: value too long for type character varying(1)
    at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2062)
    at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1795)
    at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:257)
    at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:479)
 
 
jeckels responded:  2010-01-14 15:46
Hi Bill,

From the log output it looks like the server has decided not to load the FASTA because it's already loaded the same file. I suspect there's a problem loading the modification data from the file but it's hard to tell - can you include the full stack trace from the error?

Thanks,
Josh
 
wnels2 responded:  2010-01-15 07:39
I got confused because I thought they were the same error. It makes sense now.
Thanks,
Bill