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trigger pipeline jobs using java client api

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trigger pipeline jobs using java client api ppirrotte  2011-10-02 10:35
Status: Closed
 
Hi,

To automate our workflow from acquisition to analysis we've been pushing MS raw files towards the Labkey/CPAS webdav directory where they wait to be processed.

Is there a way to trigger the xtandem pipeline (+peptide/protein prophet) via the java client api?

Kind regards,

Patrick
 
 
jeckels responded:  2011-10-03 08:57
Hi Patrick,

Yes, we introduced this a couple of releases ago. Here's the JavaDoc:

https://www.labkey.org/download/clientapi_docs/java-api/doc/

For some example code that uses the the API to automate submission of searches, grab the source distribution from here:

https://www.labkey.org/wiki/home/Documentation/page.view?name=sourceCode

The relevant file is org\labkey\remoteapi\test\MS2SearchClient.java.

Thanks,
Josh
 
ppirrotte responded:  2011-10-03 10:14
Hi Josh,

Thanks for your prompt reply. I will study MS2SearchClient.java. At a first glance it seems to be what I'm looking for.

Kind regards,

Patrick