A poster detailing how Panorama features support for MAM-related reports was presented at the ASMS (American Society for Mass Spectrometry) Conference in 2020:
The Multi-Attribute Method folder is the same as the Experiment Data folder with additional reports provided.
To set one up:
You can also change an existing Experiment folder to add the MAM reports by going to (Admin) > Folder > Management > Module Properties and setting TargetedMS Folder Type to "ExperimentMAM" for the folder.
You'll see links to the additional reports in the Document Summary section.
The Post-translational Modification (PTM) Report shows the proportion for each peptide variant’s peak area across samples. Panorama automatically groups peptides with identical unmodified sequences, but a user can configure alternative groupings within the Skyline document, to group splice variants, for example.
The Peptide Map Report shows the observed peptides in the MAM analysis, sorted by retention time. It compares the observed and expected masses, and the modifications for each peptide variant.
Beginning with version 20.11 of LabKey Server, the Peptide Map Report adds the following:
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