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HIV Study Tutorial
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"mascot_works.log" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 17:59:31,140 INFO : Check FASTA validity 30 八月 2008 17:59:31,140 INFO : ======================================= 30 八月 2008 17:59:31,171 INFO : 30 八月 2008 17:59:35,906 INFO : MzXML2Search output 30 八月 2008 17:59:35,906 INFO : ======================================= 30 八月 2008 17:59:35,906 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_10.mzXML 30 八月 2008 17:59:36,093 INFO : 30...

HIV Test Results.xls

data Participant ID Group Assignment Country Gender Start Date Height Source Lsid Date Day HIV Western Blot Standard HIV Antibody Viral Load > = < Viral Load Quantified (copies/ml) Viral Load Qualitative Result HIV Rapid Blood Test Source of HIV Tests 103866 Group 1: Acute HIV-1 USA m 2008-04-21 69 2009-05-27 401 3 103866 Group 1: Acute HIV-1 USA m 2008-04-21 69 2009-06-24 429 15 103866...

"ms2.module" attached to message "Mascot error in CPAS"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_06-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: Not built from a Subversion source tree SVNURL: Not built from a Subversion source tree BuildUser: CheeHong BuildTime: March 15 2008, 1:09 AM BuildOS: Windows XP BuildPath: F:\\CPL\\tor\\stedi\\branches\\release2.3\\server\\modules\...

"ms2.module" attached to message "Mascot error in CPAS"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_06-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: Not built from a Subversion source tree SVNURL: Not built from a Subversion source tree BuildUser: CheeHong BuildTime: March 12 2008, 6:05 PM BuildOS: Windows XP BuildPath: F:\\CPL\\tor\\stedi\\branches\\release2.3\\server\\modules\...

"labkey.log" attached to message "Java Error Message"

INFO DbScope 2014-01-14 09:20:04,294 localhost-startStop-1 : Attempting to create database "labkey" INFO DbScope 2014-01-14 09:20:04,824 localhost-startStop-1 : Database "labkey" created INFO DbScope 2014-01-14 09:20:04,965 localhost-startStop-1 : Initializing DbScope with the following configuration: DataSource Name: labkeyDataSource...

"cpas.log" attached to message "error executing /_views/HomeTemplate.gm"

19 Jan 2006 15:00:05,481 DEBUG ModuleLoader : ModuleLoader init 19 Jan 2006 15:00:05,613 DEBUG CoreModule : Ensuring databases are present 19 Jan 2006 15:00:05,738 DEBUG CoreModule : Successful connection to cpasDataSource at jdbc:postgresql://localhost:5432/cpas 19 Jan 2006 15:00:05,810 INFO DbSchema : Loading DbSchema "core" from "PostgreSQL" at "jdbc:postgresql://localhost:5432...

"110111_E2_TiO2Elu_neulossMS3.log" attached to message "Mascot 2.3 Pipeline Error with CPAS 10.3"

10 Feb 2011 20:29:20,015 INFO : Starting to run task 'org.labkey.ms2.pipeline.mascot.MascotSearchTask' at location 'webserver' 10 Feb 2011 20:29:20,031 INFO : Copying D:\LabKey Server\files\Don_Test\@files\.\110111_E2_TiO2Elu_neulossMS3.mzXML to D:\LabKey Server\files\Don_Test\@files\.\mascot\110210_MascotSearch_Test3\110111_E2_TiO2Elu_neulossMS3.work\110111_E2_TiO2Elu_neulossMS3.mzXML 10 Feb 2011...

"G24_MSMS_1614.9180_11.t2d.mzXML" attached to message "Help on t2d format"

QFF5B8UIsWsAAAAAAAAAAEBRea/7Spu8AAAAAAAAAABAUXpYNLgyggAAAAAAAAAAQFF7AHFRddkAAAAAAAAAAEBRe6ixFmXgQBCgoKAAAABAUXxQ9AcCskA0AAAAAAAAQFF8+TojTiJAKlpaYAAAAEBRfaGDa0TnQCG5ucAAAABAUX5Jz97qgj/rm5ugAAAAQFF+8h9+PWE/4ZGRoAAAAEBRf5pyST2eP84eHkAAAABAUYBCyD/rWj+0FBQgAAAAQFGA6yFiSGIAAAAAAAAAAEBRgZN9sFMjAAAAAAAAAABAUYI73SoKBAAAAAAAAAAAQFGC5D/PcI4AAAAAAAAAAEBRg4yloIUmAAAAAAAAAABAUYQ1Dp1H7AAAAAAAAAAAQFGE3XrFuPwAAAAAAAAAAEBRhYXqGdorAAAAAAAAAABAUYYuXJmoKQAAAAAAAAAAQFGG1tJFJoA...

"labkey_log.txt" attached to message "500 error trying to export a large query"

INFO DataSetDefinition 2011-09-27 09:46:44,914 TP-Processor11 : imported InfImmRec : 0.004s INFO DataSetDefinition 2011-09-27 09:46:55,738 TP-Processor1 : imported InfImmRec : 0.005s INFO DataSetDefinition 2011-09-27 09:48:00,614 TP-Processor1 : imported InfImmRec : 0.004s INFO DataSetDefinition 2011-09-27 09:48:21,426 TP-Processor5...

"cpas[1].log.1" attached to message "CPAS MS2 problem"

24 Feb 2006 21:08:31,570 DEBUG FastaDbLoader : Fri Feb 24 21:08:31 PST 2006 Entering insertIdentifiers, before collecting unparsed identifiers from temp table 24 Feb 2006 21:09:20,804 DEBUG FastaDbLoader : Fri Feb 24 21:09:20 PST 2006 In insertIdentifiers, before inserting parsed identifier batch into temp table 24 Feb 2006 21:09:24,773 DEBUG FastaDbLoader : Fri Feb 24 21:09:24 PST 2006 In insertIdentifiers,...

"500_ Error Page .htm" attached to message "Server error upon automatic cohort creation"

Emory University Development LabKey Server DHO_Healthy Aging_Workspace ...

"09FEB02_OT_57.dat" attached to message "Java Heap Memory Errors"

MIME-Version: 1.0 (Generated by Mascot version 1.0) Content-Type: multipart/mixed; boundary=gc0p4Jq0M2Yt08jU534c0p --gc0p4Jq0M2Yt08jU534c0p Content-Type: application/x-Mascot; name="parameters" LICENSE=Licensed to: NIH Central Mascot Server (263-MD-216066), (6 processors). MP= NM= COM=Conversion of E:\Sandy\Dhaval\Controls\@files\Control\mascot\PSD_protocol_Copy9\09FEB02_OT_57.work\09FEB02_OT_57.mzXML...

"050727-Brachypodium-SDS-spot_418.xtan.xml" attached to message "FATAL: Upload FAILED"

Rs_BP|59353pri:N|_4 3e-19 UniRef90_Q948Y7 VMP3 protein related cluster QQTPTKTPRT GHSAIVQRWW RCSIQCHGRQ AGFCRTGDVR RQGSVNGSRE **DRRRRRGK WRGRAWRRGR AGGARGMAAW IGGARREGCR RGGATAESSR GGGGGGARER RPGGM*ARRG MRRAGSLWRG TVGGRGAAGR AAAGSGRGGG CRRRGRPRRS *RAPRGAPPG RSPPRWPQP* WRTPRP*RRP SRRAGGWPRP *GGRRRGVLS VALCPDEG 050727-Brachypodium-SDS-spot_418.mzXML scan 415 (charge 2) 1315.6...

"FASTALoadError.log" attached to message "FASTA loading error"

09 May 2007 09:11:16,625 INFO : Sequest search for CNBr_Hse2 09 May 2007 09:11:16,625 INFO : ======================================= 09 May 2007 09:11:17,015 INFO : MzXML2Search output 09 May 2007 09:11:17,015 INFO : ======================================= 09 May 2007 09:11:17,625 INFO : running: MzXML2Search -dta -M2 -C1-2-3 -P10 07-0199.mzXML 09 May 2007 09:11:19,531 INFO : 09 May 2007 09:11:19,531...

dataset5006.tsv

ParticipantId date QCStateLabel HIVWestern HIVStdAntibody HIVLoadIneq HIVLoadQuant HIVLoadQual HIVRapidTest HIVSourceLab 103866 2008-04-30 00:00:00.0 0 103866 2008-05-28 00:00:00.0 183255 103866 2008-06-25 00:00:00.0 38618 103866 2008-07-23 00:00:00.0 7774 103866 2008-08-20 00:00:00.0 3125 103866 2008-09-17 00:00:00.0 2489 103866 2008-11-12 00:00:00.0 ...

2020.12.03.408500v1.full.pdf

See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/346632754 An Integrated Clinical, Omic, and Image Atlas of an Evolving Metastatic Breast Cancer Preprint · December 2020 DOI: 10.1101/2020.12.03.408500 CITATIONS 0 READS 5 38 authors, including: Some of the authors of this publication are also working on these related projects: ...

"Integral_SCA#4.log.txt" attached to message "Problem with running sequest searching"

31 十月 2008 08:46:01,953 INFO : Sequest search for Integral_SCA#4 31 十月 2008 08:46:01,953 INFO : ======================================= 31 十月 2008 08:46:01,984 INFO : Check FASTA validity 31 十月 2008 08:46:01,984 INFO : ======================================= 31 十月 2008 08:46:01,984 INFO : Checking sequence file validity of C:\database\T.vaginalis_20050331.aa.fasta 31 十月 2008 08:46:04,937 INFO...

"mascot mod error Oct08.rtf" attached to message "problem with searching mascot with Mods"

20 Oct 2008 10:40:41,075 INFO : Mascot search for kjo63_08jul18_21_40prot_1to1_20uL 20 Oct 2008 10:40:41,075 INFO : ======================================= 20 Oct 2008 10:40:41,325 INFO : Check FASTA validity 20 Oct 2008 10:40:41,340 INFO : ======================================= 20 Oct 2008 10:40:41,356 INFO : 20 Oct 2008 10:40:49,981 INFO : MzXML2Search output 20 Oct 2008 10:40:49,981 INFO :...

"error.log" attached to message "Enzyme is not available in mascot seaching"

27 八月 2008 17:33:37,203 INFO : Check FASTA validity 27 八月 2008 17:33:37,203 INFO : ======================================= 27 八月 2008 17:33:37,203 INFO : 27 八月 2008 17:33:40,281 INFO : MzXML2Search output 27 八月 2008 17:33:40,281 INFO : ======================================= 27 八月 2008 17:33:40,281 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_1.mzXML 27 八月 2008 17:33:40,546 INFO : 27...

"080207-2.log" attached to message "Basic Install Problem - Sequest Queue"

12 Feb 2009 16:02:21,640 INFO : Sequest search for 080207-2 12 Feb 2009 16:02:21,640 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Check FASTA validity 12 Feb 2009 16:02:22,171 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Checking sequence file validity of C:\database\uniprot-js614.fasta 12 Feb 2009 16:02:23,078 INFO : 12 Feb...