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"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2007-01-09 15:50:06,687 JobThread-2.2 : SQL [3856] INSERT INTO exp.data ( LSID,Name,CpasType,SourceApplicationId,SourceProtocolLSID,DataFileUrl,RunId,Created,Container) VALUES ( ?,?,?,?,?,?,?,?,?); SELECT CURRVAL('exp.data_rowid_seq') ?[1] urn:lsid:mskcc.org:Data.Run-28:ScoredPepXmlFile ?[2] Scored Search Results ?[3] Data ?[4] 158 ?[5]...

"output.txt" attached to message "Build Error with Labkey Trunk - Server"

Buildfile: /usr/local/labkey/server/build.xml stop_tomcat: [echo] Stopping tomcat. [java] Mar 16, 2015 12:34:04 PM org.apache.catalina.startup.Catalina stopServer [java] SEVERE: Could not contact localhost:8005. Tomcat may not be running. [java] Mar 16, 2015 12:34:04 PM org.apache.catalina.startup.Catalina stopServer [java] SEVERE: Catalina.stop: [java] java.net.ConnectException:...

"log_adina.txt" attached to message "Basic Install Problem - Sequest Queue"

06 Feb 2009 14:42:04,984 INFO : Moving C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\080207-1.work\sequest.params to C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\sequest.params 06 Feb 2009 14:42:05,109 INFO : MzXML2Search output 06 Feb 2009 14:42:05,125 INFO : ======================================= 06 Feb 2009 14:42:05,125 INFO : Working directory is C:\CPAS_Adina\Raw\Gel_Slices_raws\sequest\JS614Gels\080207-1.work...

"error2.txt" attached to message "Mascot in LabKey 8.3"

11 Dec 2008 16:03:44,777 INFO : Mascot search for test_clontech_c2 11 Dec 2008 16:03:44,777 INFO : ======================================= 11 Dec 2008 16:03:44,793 INFO : Check FASTA validity 11 Dec 2008 16:03:44,793 INFO : ======================================= 11 Dec 2008 16:03:44,793 INFO : 11 Dec 2008 16:03:44,839 INFO : MzXML2Search output 11 Dec 2008 16:03:44,839 INFO : =======================================...

"FractionwithError.log" attached to message "Enzyme is not available in mascot seaching"

02 九月 2008 06:29:00,234 INFO : Check FASTA validity 02 九月 2008 06:29:00,234 INFO : ======================================= 02 九月 2008 06:29:00,234 INFO : 02 九月 2008 06:29:05,265 INFO : MzXML2Search output 02 九月 2008 06:29:05,265 INFO : ======================================= 02 九月 2008 06:29:05,265 INFO : running: MzXML2Search -mgf 080815_Yi_B_SCX_9.mzXML 02 九月 2008 06:29:05,359 INFO : 02...

"DSM_EC_band_1.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

11 Jun 2009 14:15:58,162 INFO : MzXML2Search output 11 Jun 2009 14:16:00,245 INFO : ======================================= 11 Jun 2009 14:16:00,260 INFO : Working directory is C:\Inetpub\wwwroot\ISB\data\LCMS_data\BS154_EC\mzXML\mascot\BS_extracell\DSM_EC_band_1.work 11 Jun 2009 14:16:00,260 INFO : running: D:\Labkey server\bin\MzXML2Search -mgf C:\Inetpub\wwwroot\ISB\data\LCMS_data\BS154_EC\mzXML\DSM_EC_band_1.mzXML...

"labkey.log" attached to message "Mascot error in CPAS"

DEBUG Table 2007-12-27 13:10:30,709 8443-Processor24 : execute: 0ms DEBUG Table 2007-12-27 13:10:30,709 8443-Processor24 : SQL [51] SELECT pipeline.PipelineRoots._ts, pipeline.PipelineRoots.CreatedBy, pipeline.PipelineRoots.Created, pipeline.PipelineRoots.ModifiedBy, pipeline.PipelineRoots.Modified, pipeline.PipelineRoots.Container, pipeline.PipelineRoots.EntityId,...

"log.txt" attached to message "Failed runing xinteract"

24 ?? 2008 14:50:51,875 INFO : Mascot search for 1-1.mzXML 24 ?? 2008 14:50:51,890 INFO : ======================================= 24 ?? 2008 14:50:51,906 INFO : MzXML2Search output 24 ?? 2008 14:50:51,906 INFO : ======================================= 24 ?? 2008 14:51:15,140 INFO : running: MzXML2Search -mgf 1-1.mzXML 24 ?? 2008 14:51:15,203 INFO : 24 ?? 2008 14:51:15,203 INFO : MzXML2Search...

"080207-2.log" attached to message "Basic Install Problem - Sequest Queue"

12 Feb 2009 16:02:21,640 INFO : Sequest search for 080207-2 12 Feb 2009 16:02:21,640 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Check FASTA validity 12 Feb 2009 16:02:22,171 INFO : ======================================= 12 Feb 2009 16:02:22,171 INFO : Checking sequence file validity of C:\database\uniprot-js614.fasta 12 Feb 2009 16:02:23,078 INFO : 12 Feb...

"mascot_works.log" attached to message "Enzyme is not available in mascot seaching"

30 八月 2008 17:59:31,140 INFO : Check FASTA validity 30 八月 2008 17:59:31,140 INFO : ======================================= 30 八月 2008 17:59:31,171 INFO : 30 八月 2008 17:59:35,906 INFO : MzXML2Search output 30 八月 2008 17:59:35,906 INFO : ======================================= 30 八月 2008 17:59:35,906 INFO : running: MzXML2Search -mgf 080815_Yi_A_SCX_10.mzXML 30 八月 2008 17:59:36,093 INFO : 30...

"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2007-01-09 15:50:06,687 JobThread-2.2 : SQL [3856] INSERT INTO exp.data ( LSID,Name,CpasType,SourceApplicationId,SourceProtocolLSID,DataFileUrl,RunId,Created,Container) VALUES ( ?,?,?,?,?,?,?,?,?); SELECT CURRVAL('exp.data_rowid_seq') ?[1] urn:lsid:mskcc.org:Data.Run-28:ScoredPepXmlFile ?[2] Scored Search Results ?[3] Data ?[4] 158 ?[5]...

Luminex_Assay_200-2015-06-09-1229.tsv

container date wellRole fiBackgroundNegative stdCurve fiOORIndicator specimenID type singlePointControl excluded samplingErrors protocol regressionType outlier resVar fiBackground fiBackgroundString dilution name extraSpecimenInfo stdDevOORIndicator expConc stdDev maxStandardRecovery obsConc fi obsConcOORIndicator minStandardRecovery obsConcString beadCount description lsid dataId fiString obsOverExp...

"B_090310_09_G056L9_A09.log" attached to message "Submitting search to Mascot server...Failed to find Mascot query file"

21 May 2009 14:12:39,514 INFO : Mascot search for B_090310_09_G056L9_A09 21 May 2009 14:12:39,514 INFO : ======================================= 21 May 2009 14:12:40,296 INFO : Check FASTA validity 21 May 2009 14:12:40,296 INFO : ======================================= 21 May 2009 14:12:40,358 INFO : 21 May 2009 14:12:40,405 INFO : MzXML2Search output 21 May 2009 14:12:40,405 INFO : =======================================...

"cpas.log" attached to message "Mascot Search Error 112"

DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences b ON (a.orgid=b.orgid) JOIN prot.identifiers c ON (c.seqid=b.seqid) WHERE c.identifier='O32012|YPZC_BACSU' DEBUG Table 2006-12-11 19:57:47,783 AnnotLoader4 : [516] SELECT a.genus||' '||a.species FROM prot.organisms a JOIN prot.sequences...

"errorlog.txt" attached to message "Mascot Search Error 112"

Mascot error log file Error [M00246 - Job -16 - X00422:taxonomy] - Wed Mar 30 23:15:33 2005 - The taxonomy node file [../taxonomy/gi_taxid_prot.dmp] is missing Error [M00384 - Job -16 - X00805:fasta] - Wed Mar 30 23:28:41 2005 - gi|231051 in database NCBInr_03302005.fasta has a taxonomy id (11311) with a missing link up to 'all species'. Check that nodes.dmp is up to date Error [M00384...

"labkey.log" attached to message "Error 401"

DEBUG ModuleLoader 2007-07-16 17:36:37,956 main : ModuleLoader init DEBUG ModuleLoader 2007-07-16 17:36:38,968 main : Ensuring that all databases specified by datasources in webapp configuration xml are present DEBUG ModuleLoader 2007-07-16 17:36:39,212 main : Successful connection to "labkeyDataSource" at jdbc:postgresql://localhost/labkey INFO DbSchema...

"postgresql-9.4-main.log" attached to message "Error during configuration"

2016-04-07 09:18:58 CEST [1700-1] postgres@postgres LOG: could not receive data from client: Connection reset by peer 2016-04-07 10:47:35 CEST [2381-1] postgres@postgres LOG: could not receive data from client: Connection reset by peer 2016-04-07 11:51:59 CEST [27280-2] LOG: received smart shutdown request 2016-04-07 11:51:59 CEST [16538-1] postgres@labkey FATAL: terminating connection due to...

"helloWorld.module" attached to message "Using JQuery in a Module... Path Issue..."

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.9.4 Created-By: 1.8.0_25-b17 (Oracle Corporation) config/module.xml ...

"IPI2LL" attached to message "ERROR, XML_INPUT NOPLOT"

IPI00177321 IPI00140097 IPI00140101 IPI00043226 IPI00015171 172 IPI00177322 IPI00015173 5189 IPI00013311 79157 IPI00177323 IPI00177324 IPI00177325 IPI00157511 IPI00157512 IPI00043236 148646 IPI00043237 IPI00102268 140831 IPI00043240 89890 IPI00140105 IPI00173345 IPI00177326 124245 IPI00157513 92949 IPI00043242 154881 IPI00043243 201283 IPI00081052 IPI00015184...

"ms2.module" attached to message "Question for cluster setting and Failed running xinteract"

META-INF/MANIFEST.MF Manifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.5.0_04-b05 (Sun Microsystems Inc.) ModuleClass: org.labkey.ms2.MS2Module SVNRevision: 6278 SVNURL: https://hedgehog.fhcrc.org/tor/stedi/branches/release2.0/server BuildUser: bmaclean BuildTime: May 3 2007, 1:12 PM BuildOS: Windows XP BuildPath: C:\\proj\\cpas_release\\server\\modules\\ms2 META-INF...