Hello,

When you import an Assay Run, the file should end up in the @files/assaydata directory for the Assay's folder/project under LABKEY_HOME/files/ and then the project name (and folder path), the @files directory, then the assaydata subdirectory.

You should be able to do something like read.csv(file="FULL_FILE_PATH", header=TRUE, sep=",") and dictate the physical path of the file that contains the assay run data.

Regards,

Jon