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HIV Study Tutorial
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05-36A31-IgA-Biotin.xls

ENV1 (31) File Name: 05-36A31-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 23-Jun-2011, 04:18 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 05-36A31 Signed By: Elizabeth Nelson Document ID: 9993 RP1 PMT (Volts): 743.83 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

03-31A82-IgA-Biotin.xls

ENV1 (31) File Name: 03-31A82-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:57 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 03-31A82 Signed By: Steve Hanson Document ID: 9992 RP1 PMT (Volts): 740.17 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

05-36A31-IgA-Biotin.xls

ENV1 (31) File Name: 05-36A31-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 23-Jun-2011, 04:18 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 05-36A31 Signed By: Elizabeth Nelson Document ID: 9993 RP1 PMT (Volts): 743.83 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group...

03-31A82-IgA-Biotin.xls

ENV1 (31) File Name: 03-31A82-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 21-Jun-2011, 01:57 PM Reader Serial Number: LX10007031402 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 03-31A82 Signed By: Steve Hanson Document ID: 9992 RP1 PMT (Volts): 740.17 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

QWP timeout issue?

There's a weird issue with embedded QWPs and long queries. I've observed this for a while, but have just recently began to investigate it: We have a page here that loads QWPs. You pick a report, and the corresponding QWP loads below it. Page here: https://xnight.primate.wisc.edu:8443/labkey/EHR_Reporting/WNPRC/EHR/animalHistory.view? The same code is used to load every query. Most of the...

bug associated with study hard table transition

I updated my laptop to the latest trunk version then let it move all the EHR study data to hard tables. about 48H later, it finished. most queries seem to run still, but i get the following error when trying to run anything involving studyData: ERROR: UNION types text and integer cannot be matched Position: 1280 Ignoring filter/sort on column 'date' because it does not exist. more info: ...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0948.tsv

ParticipantId sourcelsid date Day DataSets/Demographics/Gender oldcd4 Lymphocytes Hemoglobin DataSets/Demographics/Group DataSets/Demographics/TreatmentGroup CD4 119180 4/20/2008 0 f 239 1802 17 Group 1: Acute HIV-1 No ARV 119.5 119180 5/18/2008 28 f 266 1787 18 Group 1: Acute HIV-1 No ARV 133 119180 6/15/2008 56 f 224 1843 19 Group 1: Acute HIV-1 No ARV 112 119180 7/13/2008 84 f 163 1780 17 Group...

Lab Results.xls

data ParticipantID Source_Lsid Date Day CD4+ Lymphs Hemoglobin Cohort Viral_Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227 772 1591 15.0 101344 2009-01-07...

Lab Results.xls

data Participant ID Source Lsid Date Day CD4+ (cells/mm3) Lymphs (cells/mm3) Hemoglobin Cohort Viral Load 101344 2009-03-04 311 1570 1455 15.0 101344 2008-04-30 3 811 1491 14.0 101344 2008-07-23 87 1176 1486 11.0 101344 2008-08-20 115 1292 1343 11.0 101344 2008-09-17 143 1210 1186 12.0 101344 2008-10-15 171 1158 1320 13.0 101344 2008-11-12 199 1059 1442 14.0 101344 2008-12-10 227...

HIV Disease Progression - Demo Study-ViralLoad (NASBA Method)-2019-04-11-0936.tsv

Participant ID Date Day ViralLoad (NASBA Method) Treatment Group ARVRegime Type 101344 39568 3 100 ARV ETR 101344 39596 31 193324 ARV ETR 101344 39624 59 59582 ARV ETR 101344 39652 87 702 ARV ETR 101344 39680 115 309 ARV ETR 101344 39708 143 720 ARV ETR 101344 39736 171 287 ARV ETR 101344 39764 199 183 ARV ETR 101344 39792 227 149 ARV ETR 101344 39820 255 99 ARV ETR 101344 39848 283 1980 ARV ETR 101344...

Troubleshoot Installation and Configuration

In case of errors or other problems when installing and running LabKey Server, first review installation basics and options linked in the topic: config. This topic provides additional troubleshooting suggestions if the instructions in that topic do not resolve the issue. LabKey Logs Log Rotation and Storage Service Startup Must Create labkey-tmp Location Linux Service Troubleshooting...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

08-12A12-IgA-Biotin.xls

ENV1 (31) File Name: 08-12A12-IgA-Biotin.srbx Analyte: ENV1 (31) Acquisition Date: 25-Jun-2011, 04:16 PM Reader Serial Number: LX10011084403 Standard Lot: Standard1 Expiration Date: <none> Plate ID: 08-12A12 Signed By: Steve Hanson Document ID: 9995 RP1 PMT (Volts): 684.74 RP1 Target: 16357 Analyte Type Well Description FI FI - Bkgd Std Dev %CV Obs Conc Exp Conc (Obs/Exp) * 100 Group Ratio...

"labkey.log" attached to message "Error during configuration"

INFO ModuleLoader 2016-04-04 15:02:46,253 localhost-startStop-1 : __ || | _ |_ |/ _ (¯ _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / INFO DbScope 2016-04-04 15:02:47,552 localhost-startStop-1 : Initializing DbScope with the following configuration: DataSource Name:...

server crash

hi guys, our labkey server crashed at ~2pm today. to my knowledge, there was nothing out of the ordinary going on. below is the tomcat log. see out of memory errors near the bottom. is there any other information we should get? ERROR Table 2010-04-26 12:30:26,109 t: http-8443-Processor22 : internalExecuteQuery org.postgresql.util.PSQLException: ERROR: canceling...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

youtil.R

## # Copyright (c) 2011 Fred Hutchinson Cancer Research Center # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License...

"labkey20180611.log" attached to message "Assay run imports are successful, but no data rows are visible"

INFO ModuleLoader 2018-03-30 16:38:25,393 main : __ || | _ |_ |/ _ (� _ _ _ _ (__) |_(_||_)|\(/_\/ _)(/_| \/(/_| / ERROR DbScope 2018-03-30 16:38:27,675 main : Connection to "labkeyDataSource" at jdbc:postgresql://localhost/labkey failed...