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GenericAssay_Run1.xls

Sheet1 participantid Date M1 M2 M3 249318596 5/17/08 543 1830 14.5 249320107 6/4/08 645 1600 11 249320107 7/16/08 234 1500 14.3 249320489 7/30/08 324 1600 11.9 249320897 5/1/08 1045 2000 15.6 249325717 4/27/08 874 2000 18 Sheet2 Sheet3

GenericAssay_Run1.xls

Sheet1 participantid Date M1 M2 M3 249318596 5/17/08 543 1830 14.5 249320107 6/4/08 645 1600 11 249320107 7/16/08 234 1500 14.3 249320489 7/30/08 324 1600 11.9 249320897 5/1/08 1045 2000 15.6 249325717 4/27/08 874 2000 18 Sheet2 Sheet3

GenericAssay_Run3.xls

Sheet1 participantid Date M1 M2 M3 249318596 6/17/08 453 100 15 249320107 6/5/08 546 200 12 249320107 7/17/08 432 300 15 249320489 5/30/08 234 400 12 249320897 5/15/08 4015 500 16 249325717 7/27/08 748 600 99 Sheet2 Sheet3

GenericAssay_Run4.xls

Sheet1 participantid Date M1 M2 M3 249318596 6/7/08 435 1111 15 249320107 6/6/08 456 2222 13 249320107 3/16/08 342 3333 15 249320489 6/30/08 222 4444 14 249320897 5/4/08 543 5555 32 249325717 5/27/08 676 6666 12 Sheet2 Sheet3

GenericAssay_Run3.xls

Sheet1 participantid Date M1 M2 M3 249318596 6/17/08 453 100 15 249320107 6/5/08 546 200 12 249320107 7/17/08 432 300 15 249320489 5/30/08 234 400 12 249320897 5/15/08 4015 500 16 249325717 7/27/08 748 600 99 Sheet2 Sheet3

GenericAssay_Run1.xls

Sheet1 participantid Date M1 M2 M3 249318596 5/17/08 543 1830 14.5 249320107 6/4/08 645 1600 11 249320107 7/16/08 234 1500 14.3 249320489 7/30/08 324 1600 11.9 249320897 5/1/08 1045 2000 15.6 249325717 4/27/08 874 2000 18 Sheet2 Sheet3

dataset5017.tsv

ParticipantId date QCStateLabel ParticipationConsent GeneticConsent 249318596 2008-05-17 00:00:00.0 true true 249320107 2008-06-04 00:00:00.0 true false 249320127 2008-07-30 00:00:00.0 true true 249320489 2008-07-30 00:00:00.0 true true 249320897 2008-05-01 00:00:00.0 true true 249325717 2008-04-27 00:00:00.0 false false

specimens.tsv

# specimens record_id record_source global_unique_specimen_id lab_id unique_specimen_id ptid parent_specimen_id draw_timestamp sal_receipt_date specimen_number class_id visit_value protocol_number visit_description other_specimen_id volume volume_units stored storage_flag storage_date ship_flag ship_batch_number ship_date imported_batch_number lab_receipt_date...

Advanced_Archive.specimens

advanced_repository_zip/additives.tsv # additives additive_id ldms_additive_code labware_additive_code additive 8 REDTOP 9 PLAINRED 12 LST_HEP 13 LST_CIT 1 ACD ACD Acid Citrate Dextrose 14 ORA Orasure Collection Container 15 AHP Ammonium Heparin 16 PAC Port-a-cul Transport Tube 17 CPD Citrate Phosphate Dextrose 18 PAX PAXgene Blood RNA tube 19 CPH Cell Preparation Tube Heparin 20 PBS...

LabKey.specimens

%/ةد�ذدز # labs lab_id ldms_lab_code labware_lab_code lab_name lab_upload_code is_sal is_repository is_clinic is_endpoint street_address city govering_district country postal_area description 5 435 Mont Montlake University 1 10 460 Hptc High Point Clinic 1 19 350 Delb Delridge Biomedical 1 20 510 Rain Rainier Lab Storage 1 21 515 Alki Alki University 1 ...

linking specimien to assay

Is there a link from assay data to the specimen that was used in the specimen repository. For example, using the tutorial data and the Microarray assay, is there a way to determine and view specimen used for each run? If I select an assay from the miccroarray dataset and select "View Specimens" it gives an empty list with the message: This view is displaying specimens only from particpant(s) 249320489...

participant_groups.xml

103866 110349 120043 121933 125478 133428 144740 150489 155805 174815 175603 185014 209005 211137 213932 219304 237773 249318596 249325717 266626 278889 293749 296663 298529 303553 309880 338626...

Weight by Time.db_64.report.xml

Reports - Deprecated true timeChartReportDescriptor Weight by Time 10.39 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"subjects","displayIndividual":true,"displayAggregate":false,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Physical Exam","measures":[{"measure":{"id":34,"name":"Weight_kg","label":"Weight...

Viral Load per Participant.db_61.report.xml

Reports - Deprecated true timeChartReportDescriptor Viral Load per Participant 12.2 ReportService.TimeChartReport {"chartLayout":"per_subject","chartSubjectSelection":"subjects","displayIndividual":true,"displayAggregate":false,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"HIV Test Results","measures":[{"measure":{"id":41,"name":"HIVLoadQuant","label":"Viral...

cohorts.xml

101344 103505 103866 107201 119180 120043 121933 125478 133428 140163 150489 150817 151224 154864 155805 160386 165074 166726 167572 172476 174815 175603 185014 186899 191927 209005 211137 213932 220376 226423 234482 237773 246655...

Lab Results - Mean CD4+ Count.db_40.report.xml

false timeChartReportDescriptor Lab Results - Mean CD4+ Count 13.3 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Lab Results - Mean CD4+ Count","measures":[{"measure":{"id":63,"name":"CD4","label":"CD4+...

Average CD4+ Levels Per Cohort.db_33.report.xml

Reports false timeChartReportDescriptor Average CD4+ Levels Per Cohort 12.1 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Average CD4+ Levels Per Cohort","measures":[{"measure":{"id":18,"name":"CD4","label":"CD4+...

Lymphocyte Count_ Disease Progression without ARV.db_41.report.xml

Reports false timeChartReportDescriptor Lymphocyte Count: Disease Progression without ARV 12.2 ReportService.TimeChartReport {"chartLayout":"single","chartSubjectSelection":"groups","displayIndividual":false,"displayAggregate":true,"aggregateType":"Mean","errorBars":"None","lineWidth":3,"hideDataPoints":false,"pointClickFn":null,"title":"Lab Results","measures":[{"measure":{"id":48,"name":"Lymphocytes","label":"Lymphs...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-09492.tsv

ParticipantId sourcelsid date Day DataSets/Demographics/Gender oldcd4 Lymphocytes Hemoglobin DataSets/Demographics/Group DataSets/Demographics/TreatmentGroup CD4 119180 4/20/2008 0 f 239 1802 17 Group 1: Acute HIV-1 No ARV 120 119180 5/18/2008 28 f 266 1787 18 Group 1: Acute HIV-1 No ARV 133 119180 6/15/2008 56 f 224 1843 19 Group 1: Acute HIV-1 No ARV 112 119180 7/13/2008 84 f 163 1780 17 Group...

HIV Disease Progression - Demo Study-Lab Results-2019-04-11-0949.tsv

ParticipantId sourcelsid date Day DataSets/Demographics/Gender oldcd4 Lymphocytes Hemoglobin DataSets/Demographics/Group DataSets/Demographics/TreatmentGroup CD4 119180 4/20/2008 0 f 239 1802 17 Group 1: Acute HIV-1 No ARV 120 119180 5/18/2008 28 f 266 1787 18 Group 1: Acute HIV-1 No ARV 133 119180 6/15/2008 56 f 224 1843 19 Group 1: Acute HIV-1 No ARV 112 119180 7/13/2008 84 f 163 1780 17 Group...