Hi,

To see if your transform script is getting called, you can enable the Save Script Data option in your Assay. Turning that feature on in the assay is a great way to debug your transform script and see what values it is passing across to the Assay Run and Assay Data tables. (
https://www.labkey.org/Documentation/wiki-page.view?name=programmaticQC)

Regarding the Program Command, if you enable the Save Script Data option, using that option in the Program Command will not be necessary. But if you do want to use it, I would recommend adding quotes around it like "${runInfo}". This is especially important if your path to python has spaces in it.

Regards,

Jon